Halichoeres trimaculatus (threespot wrasse): 141801796
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Entry
141801796 CDS
T11192
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141801796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htc03021
]
141801796
03019 Messenger RNA biogenesis [BR:
htc03019
]
141801796
Transcription machinery [BR:
htc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141801796
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141801796
U7-dependent histone pre-mRNA processing factors
141801796
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
141801796
NCBI-ProteinID:
XP_074541163
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MAAKRKSDTTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPRNTEAVTLNFRGEKLAKVMGSLTDR
KCVQGQRVSGILIKRNFNYHIVTPSDLSNYTDLSMGVVTQSQAIPYTGPISLLVSQLRSL
TGDVEQVEGADKITIRIFKSITLIHEAGMVLLEWIANPLNDMYADVVTTVVLEVQSNPNA
QKFLEGKRETFDMDVFVERLGLMLHDMFGDDCVNFKDSKNLSVTVDGVTAHIDSETRAVS
CPEDESLREMIEVAIHRLFDALSPACDVPTRGRPSLPVSETC
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaacgtaaatcggacaccacggttcctgcggaggaaagtgatcagctcctg
atccgtccgctaggagcaggtcaggaggtgggacgatcctgcatcatcctggagttcaaa
ggacgaaagatcatgctggactgtgggatccatccaggtctggagggcatggacgctctg
ccgtacatcgatctgatcgatccggctgagatcgacctgctgctcatcagccacttccat
ttggatcactgtggagctctgccctggttcctgcagaagaccagcttcaaaggacgcacc
ttcatgactcacgccaccaaagccatctaccgctggctgctgtctgactacgtcaaagtc
agtaacatctcagcagatgacatgctctacactgagaccgacctggaggagagcatggag
aagattgagaccatcaacttccacgaggtgaaggaggtagccggcatcaagttctggtgt
tatcacgccggtcacgttcttggagcggcaatgttcatgattgagattgctggagtcaag
ttgttgtacacaggagacttctctcgtcaggaggacagacatctgatggcagcagagatc
cccagtgtcaaaccggacattctcatcaccgagtctacatacgggactcacatccacgag
aagcgggaggagagggaggctcgtttctgtaacacggtgcacgatatcgtgaacagagaa
ggtcgctgtttaatcccagtctttgctctagggcgagctcaggagctgctgctcatcctt
gacgagtactggcagaaccatccggagctccacgacatcccgatctactacgcctcgtct
ctggccaggaagtgtatggccgtctaccagacctacatcaacgccatgaacgacaagatc
cgtaaagccatcaacatcaacaatccctttgtcttcaagcacatcagcaacctcaagagc
atggatcactttgatgacatcgggcctagcgtggtgatggcatccccaggtatgatgcaa
agcggcctgtccagagagctgtttgaaagttggtgcaccgataagagaaacggcgtcatc
atcgctggatactgtgtggaggggacgctcgctaagcacatcatgacagagccggatgaa
atcgccaccatgtcgggtcagaaacttcctctgaagatgtccgtggactacatctccttc
tctgctcatacagactaccagcagaccagcgagttcatcagagcgcttaaacctccgcac
gtgattctggttcacggtgagcagaacgagatggcccgtctgaaagcggctttgatccgt
gagtatgaggacaatgacgaggtcgacatcgaagtccacaacccacgaaacactgaagca
gttacgctcaacttcagaggagagaaactggcaaaggtgatgggctctctgacggacagg
aagtgtgttcagggtcagagggtgtctgggatcctcatcaagaggaacttcaactatcac
attgtgacgccctccgacctctccaactacacagatctgtccatgggcgtagtgactcag
agtcaggccatcccctacaccggacccatctccctgctggtcagccagctgcgcagcctc
acaggagatgtggagcaggtggagggggccgacaaaatcaccatcaggatttttaaaagc
atcactctgattcatgaggcgggcatggtgcttcttgagtggatcgccaaccctctcaac
gacatgtacgctgacgttgtcactacagtcgtcctggaggtccaatccaaccccaacgcc
cagaaatttcttgaaggaaaaagagaaacgtttgacatggacgtgtttgtggagaggctg
gggctcatgctgcacgacatgtttggagatgactgtgtgaacttcaaagatagtaaaaac
ttgagcgtgacagtggacggagtcaccgctcacattgattcagaaaccagagcggtgtca
tgcccagaggacgagtctctcagggaaatgattgaagttgcaatccacaggctctttgac
gctctcagccctgcatgtgatgtccccaccagggggagaccatcactgcctgtcagtgaa
acctgttag
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