Halichoeres trimaculatus (threespot wrasse): 141802729
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Entry
141802729 CDS
T11192
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141802729 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htc03019
]
141802729 (skic2)
Enzymes [BR:
htc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141802729 (skic2)
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141802729 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
141802729 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
141802729
NCBI-ProteinID:
XP_074542514
LinkDB
All DBs
Position
Unknown
AA seq
1244 aa
AA seq
DB search
MERINVPPPGPTDLPMSLLEMGCSGRFELITHPLPDQPLPPQSTLPHGLPPTSLSLETEV
EKQFLQDPAWLPIHDTDFAFQKFLKVTQRDVNVDSLLSCTPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSFQRQPGPPSESLRGSNTNYPFLPGGMEELSLDQIKKKSDLE
EDIDFENDLLRVPVGLKAGMDFTDKNSKTAKAEVNLMSLLSSHDDITGLQPEEEEKEEGK
KSEDAPKLPRTNSLEDLGIKDAVSSSAPSEKGKDEKSKPKENPEENKKWAIPVDISSPCD
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAVGNFLTKGHYAAVDAKKERTSKHAQ
SFGAKNASHNTTASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
VEKAEIHSFFQKSMSRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRITQLKQSLSSLPPLDTDGQLSDMLPYYHTVTELRTTTEILQRAILESVNGL
KALSVGRVVVVNNKQHLNALGVILQVSNDSVNRTFTALIICEKGNEEGEGKSNDALPHLF
NTALFIPEGPCSHTVQKLKLQDVTAITVKTLKVIPDRIIDNYNKRQQPRFRHDPPGQAIS
TATQELLRLAEANPGGIASLDPVNDLQLKSVDVVEGSMRCRVLQESLKEFNCIHSPTFAE
QFARVQERMSVQEELDKLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSNGAVQLKGRVAC
QISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLSVA
QRIGELQRDCEIPQTVEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCIQR
LDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggaacgaataaatgtgccccctccgggccccacagacctgcccatgtccctgctggag
atggggtgctctggcaggtttgagctcatcacacaccccctgcctgaccagcctttacct
cctcaaagcacgcttccccatggactccctcccaccagcctgagcttggagacagaagta
gagaagcagtttttacaagaccctgcctggcttcctatccatgacacagattttgccttc
cagaagtttctcaaggtgactcagagagacgttaatgtcgactctttactcagctgcact
ccgtctcctcttcactctggtctctctgtcgtcagagatccaaccacaggaatgctgttg
gacttcaccgaggtgttactggagaacactggcctgtcagcaaagaactcgctgtcattt
caacgacaaccaggacctccttcagagagcctcagaggaagcaacaccaactatccgttc
cttcctgggggtatggaggagcttagtctggaccaaatcaagaagaagtctgaccttgag
gaggacatagactttgaaaatgatttactcagagtcccagttgggctcaaagctgggatg
gacttcacagacaaaaactccaagacggcaaaagcagaggtcaatctcatgtccctcctg
tcgtcacatgacgacatcactggtcttcagcctgaggaagaggagaaagaggaggggaaa
aaaagtgaagatgctcctaaacttcctcgaacaaacagccttgaagatctgggcatcaag
gatgctgtgtcatcctctgctccttcagagaaaggaaaagatgagaaatcaaaaccaaaa
gagaatccagaggaaaataaaaagtgggcaatccctgtcgacatttcttcaccctgtgat
gatttctacaaacgcatccccaacccagctttcaagtggccgttcgagctggataccttc
cagaagcaggccgtgctcaggctggaggctcacgactcggtgtttgtggcagctcacaca
tcagcaggaaaaacagtggtggctgaatatgccattgcgctatcacagaaacacatgaca
aggaccatctacacctctcccatcaaagccctgtccaatcagaagttcagagactttaaa
accacatttggagatgtgggactcctcacaggtgatgtccagctcagccctgaatcctcc
tgcctcatcatgaccactgagatcctcaggtctatgctttacaacggctcagaagtcatc
agagacttggagtgggtgatctttgatgaggttcactacatcaatgacgccgagagagga
gtcgtctgggaggaagttttgatcatgcttcctgatcacgtcagtatcattctcctcagc
gccacagtgccaaacgctctggagttcagtgagtggatcggtcggataaagaagaggcat
atctacgtcatcagcacgatgaagagacctgtacccttggagcattatctgtacacagga
aacagcaccaagactcagaaagagatgttcctgctggtggacgctgtgggaaacttcctc
acaaaagggcactacgcagctgttgatgcaaagaaggaacgcaccagcaaacacgcccaa
tcattcggcgcaaaaaatgcatcccacaacaccacagcaagtcaggaccgagcggtgtgg
ctcactctactacacttcctgtcccagaggcagcagacgccagtggttgcgtttacgttc
tctcggacgcgctgtgatgagaacgcccgctcgctagactccatggatttgacgacctct
gtggagaaggctgagatccactcgttctttcagaagagcatgagtcgccttcgaggagga
gaccggcagcttcctcagattttgctcatgagggatctcctgaagaggggaataggcgtt
caccacagtgggatcctgccgatactgaaggaggtcatcgagatgctcttctcaagaggt
ctcgtgaaggttctgtttgccacagagacgtttgcgatgggagtgaacatgcctgctcgc
actgtggtcttcgacagcatcagaaaacacgacggcaccggcttcagaaacctgctccca
ggtgagtacattcagatggcgggcagagcgggcaggagaggcctggacgccactggcaca
gtcatcattctgtgcaaagctggagtccatgagatggcagatctgcacgtcatgatgctg
ggtaaacccaccgtcctccagtcccagttcagactcacctacaccatgatcctcaacctg
ctgcgagtggaagctctccgtgtgactgacatgatgaggaggagcttctctgagagccac
agggacactcaggcccatgaaaagaggatcacccagctgaagcagtcgttgtcttctctg
cctcctctggacacagacggccagctgtccgacatgttgccttactaccacactgtaact
gagcttcgaaccaccactgagatccttcagcgtgcgattctggagtctgtgaatgggctg
aaagctctgtctgtgggccgcgttgtcgttgtcaacaacaaacagcatctcaacgccctt
ggagtgatactacaggtgtccaatgactctgtgaaccgcacctttaccgctctcatcatc
tgtgagaaaggcaacgaggaaggagaaggcaaaagcaatgatgctctgcctcacctgttc
aacacagctctctttatccctgaaggtccctgcagccacacggtgcagaaactgaagctt
caggacgtcacagccatcacagtgaaaaccctcaaagtgattccagaccggatcatcgac
aactacaacaagaggcagcagccacgattcagacacgaccctcccggccaggccatctcc
acagcaacccaggagctcctgcgattggccgaagctaaccccggcggcatagccagcttg
gaccccgtgaacgacctccagctgaaaagcgtggatgtggtggagggctccatgaggtgc
cgcgtgctgcaggagagcctcaaagagttcaactgtatccactcacctactttcgcagag
cagttcgcccgtgttcaggagaggatgagtgtgcaggaggagctggacaagctgctgttc
ctggtgtctgatcagtctttgtccctgctgcctgaataccaccagagaatcaaggtgctg
cagtcgctccagtacgtcgacagcaacggtgcagtgcagctcaaaggccgcgtggcctgt
cagatcagcagccatgagctcctgctgacagagctgctcttcgaaaacgtcctgagccca
ctcgctcctgaagagagcgccgccctgctgtcctgtttggtctttacacagaacacgcag
gtggagcctcacatcaccaacacactacaggagggcatcgatcgagtgctgtcagtggcc
cagcgtatcggagagctgcagagggattgtgagatacctcagacagttgaggagtttgtc
ggccaattcaagtttggcctgacagaggtggtttactgctgggccagaggcatgccgttt
gcagagatcgccctgctgacagacgttcaggaaggcacagtggtccgctgcatccagcgc
ttggacgaggtgctgaaggaggtgcgtcaggccgcccgtattgtgggtgactccgtcctg
gggagcaaaatggagaaagcctccctggccatccgcagggacatcgtcttcaccgcctcc
ctctacacccactga
DBGET
integrated database retrieval system
