Halichoeres trimaculatus (threespot wrasse): 141804745
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Entry
141804745 CDS
T11192
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03030
DNA replication
htc03410
Base excision repair
htc03420
Nucleotide excision repair
htc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141804745 (lig1)
03410 Base excision repair
141804745 (lig1)
03420 Nucleotide excision repair
141804745 (lig1)
03430 Mismatch repair
141804745 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htc03032
]
141804745 (lig1)
03400 DNA repair and recombination proteins [BR:
htc03400
]
141804745 (lig1)
Enzymes [BR:
htc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141804745 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
141804745 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
141804745 (lig1)
DNA replication proteins [BR:
htc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
141804745 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
141804745 (lig1)
DNA repair and recombination proteins [BR:
htc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
141804745 (lig1)
NER (nucleotide excision repair)
Other NER factors
141804745 (lig1)
MMR (mismatch excision repair)
Other MMR factors
141804745 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
141804745
NCBI-ProteinID:
XP_074545458
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MQRSIASFFQPKGKEIQKKNADESVKKTVKSPLKVQNGVQEADSPIKKVAKRSRQILDSD
DDDVPVVKEQVPAKGEKDAAGKTEKKDDVFKAVPTPLSPPPAPATPVTPSTPATPATSAS
PGTPSTPNSTSPSGFVKRKTARKMFPKRKLDESRSESQKAESEVKEEQGQQNKRPRVDSG
GGSAACAGNADEPMEEGAKEEEVESVVTEANSPDEEVGKKKKKKEEEEKAKEEERAERRS
SDEEAKKAGGAVKKNEAKEKTDDESGPSDAKKEVVEKDTREGEESPKSQTEKKQKEAKEQ
KDKETPKKAPISSFFAPRKAATKTEKPEKDEGEKKTSAERKTSAEESKETKSESASGPTD
FNPSRSNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPD
DLLCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAES
SRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRS
LAGKLRIGLAEQSVLSALSLAVCLTPPGQAFPPAVIDAGKGMSAESRRAWIEEKSLILKQ
TYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTC
EYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIIARIPKVKKDSVVSCVLDSEAVAW
DREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCQRRALLRES
FSEVEGEFVFAKYIDSDNTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKL
KKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDL
EQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPV
KGISLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGEKADLEDYY
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaaaggcaaggagatccagaagaaaaat
gcagatgaatctgtgaaaaaaactgtcaaaagcccgcttaaggtgcagaacggcgtccag
gaagccgattcacccatcaagaaggttgccaaacgcagccgtcagatcctggacagcgat
gacgacgatgtgccggtggttaaagaacaagtccctgcaaagggagagaaagatgctgct
ggtaaaacggaaaagaaggacgatgtgtttaaggcagtccccacccccctgtctcctcca
cccgccccagcaacccctgtgactccttccactcctgccactcctgccacgtcagcttca
cctggaaccccaagcaccccaaactccacctcaccttctgggttcgtgaaacgcaaaaca
gcaaggaagatgttccccaagaggaagcttgatgagagccggagtgagagtcagaaggcc
gagtctgaggtcaaggaggagcagggtcagcaaaacaaacgtccccgtgtggacagcggt
ggcggcagcgcagcctgcgcagggaacgccgatgaacccatggaggagggagcaaaggaa
gaagaagttgaatcggtggtgacagaggctaacagcccagatgaggaggtggggaagaag
aagaagaaaaaagaggaagaagagaaggccaaggaggaggagcgggccgagagacgcagc
tctgatgaggaagcaaagaaagccgggggggcggtgaagaaaaacgaggcaaaggagaag
acggatgatgagagcgggcccagcgatgccaagaaggaggtagttgaaaaggacacgcga
gaaggagaagagagcccgaaaagtcaaactgagaaaaaacagaaagaggcgaaagagcag
aaagataaggagacacccaagaaagcccccatcagcagtttctttgctccaagaaaagct
gcaacaaagaccgagaaaccagagaaggatgaaggggagaaaaagacgagtgcagagagg
aagacttcagcagaggagagcaaagagactaaaagtgagtcagcctcaggaccaacagac
ttcaacccatccaggtcgaactaccatcctgtggaccacgcgtgctggaagcagggccaa
aaagtaccatacttggcggtggcgcgcaccttcgagaagattgaggaggactctggcagg
ctgagaaacatcgagacgctgtcgaacctgtttcgctccgtgctgctgctctctccagat
gacctgctgtgctgtgtgtacctgtgtctgaaccagctgggtcctgcccacctggggatg
gagctcggtgttggagagacggtgctgatgaaagctgttgctcaagcgactgggcgacaa
ttggacaaaatcaaggcggaggcgcaggagaaaggagatttaggccttgtggccgagagt
tcccgtagcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtgttc
aggaaattgaaggaaattgccagcatgagtgggaactcggccatgaataagaaaatcgac
atcatcaaaggcctctttgtggcgtgccgcttttctgaggcccgctacatcgtcaggtct
ctggctggaaagctgagaattggactggctgagcagagcgtcctttcagcactgagcctg
gctgtgtgcctgaccccacctggacaagcttttccacccgctgtgattgacgctgggaag
gggatgagcgccgagagcaggcgggcctggatcgaagagaagagtctcattctcaaacag
acttactgcgagatgcccaattacgacgtccttatccccgttctcctgaaagagggcata
gacgagctacccaatcactgcaagctcactccaggtgtgccgctcagacccatgttggct
caccccactaaaggtgtcggcgaggtgatgaagaagtttgatgaagcagcgttcacctgc
gaatacaaatatgacggagagcgtgcacagatccacatcctagagaatggcgaggttcga
atattcagccgcaaccaggaagacaacaccagcaaatacccagatatcatcgctcgcatt
cccaaggtgaagaaggactctgtggtgtcctgcgtcctggactctgaggcagtggcctgg
gatcgtgaaaagaagcagatccagcccttccaggtcctcactacgcgtaagagaaaggac
gtggatgcatcagagatcaaagtccaagtgtgtgtgtatgcctttgacctcctctacctc
aacggcgagtccttggtgcgacagccattgtgtcagcgtcgggctctgctgagagaaagc
ttctctgaggtggagggagagttcgtgttcgccaaatacatcgactccgacaacacagag
accatcgcagagttcttggagcagtccgtgcgagactcctgtgagggcctaatggtgaag
acgctggagaaggacgccacctatgaaattgcaaagcgctctcataactggctcaagctg
aagaaggattacctggaaggggtgggcgacacagtggacctgtgtgtgattggcgcctac
ctggggaaaggaaagaggacgggcacatacgggggcttcctgctggcctgctacgacgag
gagaacgaggagttccagtctgtttgcaagatcgggacaggcttcaaggatgaagatctg
gagcagcattacaagttcttaaaggagcacattcttcccaaaccacgcgcctactaccgt
gtcgaccaatcagcagagcccgatgtgtggctggacgccgtgcaggtttgggaggtgaag
tgcgccgacctgtcgctgtcacctgtctacaaagctgccatgggattggtggatcctgtg
aagggcatttctctgagattccctcgcttcctccgtatcagagatgacaagaagcctgag
gatgctacaagtggagctcagattgctgatctgtataagaagcagcagcagatccagaac
cagggggagaaagctgacctggaggactactactga
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integrated database retrieval system
