KEGG   Halichoeres trimaculatus (threespot wrasse): 141805140
Entry
141805140         CDS       T11192                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
htc  Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:htc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141805140 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:htc03041]
    141805140 (prpf4)
Spliceosome [BR:htc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    141805140 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st PRP4 Beta-prop_Aladin NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_EIPR1 WD_LRWD1 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR11_1st WD40_like Beta-prop_Nup120_160 Tricorn_2nd Beta-prop_WDR35_TULP_N DUF7239
Other DBs
NCBI-GeneID: 141805140
NCBI-ProteinID: XP_074546001
LinkDB
Position
Unknown
AA seq 510 aa
MSDDEDMAPAVKRSRVFYGSLEEKERERLSLQTGSSTGAGSDAVKAGIEAGNINISSGET
LEIEERVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSKRDEDRAKRSHDECQQTWYHEGSASLKEARLWIAKYSLPLAVKR
LDAARAQKEVSESTKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQVGICLDESDVSLASCAADGSVKLWNLES
DEPVADIEGHTERVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDLS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCK
VWDLRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHE
GKVMGVDVSPDGKLIATSSYDRTFKLWLSE
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtcggacgatgaggatatggccccggctgtgaagaggagtagagttttctatggaagc
ttggaggagaaagaacgtgagcgtctgagcttacaaacagggagcagcacaggagcagga
agtgatgctgtgaaggcaggcattgaggcaggaaacatcaacatctcctcaggagagaca
ctggagatagaggagcgtgtcagtgagcgtcagcaggaagcgcttgctgcatttgagcgg
cgacgaagagcacggcagatcactgtatccacagacgatgctgaggtgaaggccggcctc
cgagcacttggggagccaatcacattgtttggagagggaccggctgaccgcagagaaagg
ctgcgcagtgttctctctgtggtcgggccagacgctctgaagaaatcgaagagagatgaa
gacagagccaaaagatcccatgatgagtgccagcagacttggtaccatgaaggctccgcc
tccctgaaagaagctcgcctctggatagccaaatactctctaccccttgcagtgaagcgt
ctggacgctgcacgtgctcaaaaggaggtttctgagtcaaccaagacgatccgacagcag
gaattacacaaaagtctgagaaatctcaacaacttctgcagtcagattggtgacgatcga
ccaatcagcttctgccactttagtccagactccaaaatgctggccactgcttcttggagc
ggcctatgtaagctgtggtccgtccccgactgtaacctgatcagaacgcttagaggacat
aacaccaacgtgggcgcagtagtcttccgtcctcaggttggcatttgccttgatgaatca
gatgtcagcctggcatcatgtgctgcagatggatctgtgaagctctggaacctggaaagt
gacgagccagtggcagacatcgaaggtcacaccgaacgtgtctcccgagtgtcttggcat
ccttctggaaggtttctgggaacaaccagttatgataactcatggcgtctgtgggatctg
gaggttcaggaggagattctccatcaggagggtcacagcaagggagtccatgacctcagc
tttcacccagatggctcactggctgctacaggagggctggatgctttcggcagagtctgg
gaccttcgaacaggtcgctgtgttgttttcctggaaggacacctgaaagagatctacagc
ctgcacttctcacccaacgggtatcacctagccacaggaagtggagataacacctgtaag
gtgtgggatctgagaaacaggaagtgtctgtacacagttcccgcccaccaaaacctcttg
tcagctgtccgtttccagcctacagacggtcacttcctgttgacgggagcatatgacaac
acagcaaaagtttggagtcacccaggctggatgccactgaagacactggctggacacgaa
ggaaaggtgatgggtgttgatgtgtcacctgatgggaaactgatcgccacaagctcctat
gaccgaaccttcaaactatggctttcagagtga

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