Halichoeres trimaculatus (threespot wrasse): 141807747
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Entry
141807747 CDS
T11192
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
141807747 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
htc00536
]
141807747 (col11a1a)
Glycosaminoglycan binding proteins [BR:
htc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141807747 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
141807747
NCBI-ProteinID:
XP_074550044
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTVTAFITLVLVLQAANVRAADPVDVLKVLDFQNYPEGVTKT
PGFCKNRRASNPDSAFRVAKEVQISAPTTQLFPDGVFPEDFSILTTVRPKLGLQSFLLSI
YNQQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRTFNLADGKWHRVAISVEKKTVTI
IVDCKKKITKPLLRSDHASIDANGITVFGTRLLDEEVFQGDIQQLMIVPDPKAAYDYCEH
YSPDCDTPHRDSLQAQEPEELEYTTDDLDYSQFYDYSEGATDIIPTDEYSDPQPNIVEGD
FNTEYDYGTVDGTQTQSPYGSHGPEEAVEEDLVGAFATEAPPPALEPTVVPETSDNLNPG
ADSYNFKEYDLKEYDLGAVDNKLYDYGAYDEYGTDPSKTVEAFDDEVGPGVAAETDVSES
AIAGVGGAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPAGDPGDRGP
PGRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGP
MGLTGRSGPVGLPGSTGLKGESGDHGPQGPRGIQGPAGQSGKAGKRGRAGADGARGMPGE
PGTKGDRGFDGLPGLPGEKGHRGEPGPMGPPGASGEDGQRGEDGEIGPRGLAGESGPRGL
LGPRGPPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGE
KGPSGRSGLPGLPGADGPPGHPGKEGPPGEKGAQGPSGPQGPIGYPGPRGVKGADGVRGL
KGSKGEKGEDGFPGFKGDMGIKGDRGESGMLGPRGEDGPEGPKGRAGPNGESGPLGPAGE
KGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRGARGA
RGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE
TGFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGGAGKEGAKGDPGP
QGPPGKDGPPGLRGFPGERGLPGAAGPAGLKGGEGPQGPPGPVGSPGERGPAGQAGPIGL
SGRPGPQGPPGPAGEKGAPGEKGPSGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGE
PGQKGSKADKGEQGPPGPAGLQGPPGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGP
PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGE
KGEQGEAGNPGPPGEPGVGGPKGERGEKGEAGPPGAAGPAGARGPPGDDGPKGNPGPVGF
PGDPGPPGEPGVAGTDGEAGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR
QGEKGAKGEAGSEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGP
MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDSGIRGS
SGPLGPPGPPGLPGPQGPKGAKGSSGTAGPKGDTGAVGPPGPPGPPGEVIQPLPIQSPKK
TKRSSDMQSDAAATIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCH
PEFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNAVRISSWPKEVPGSWFSE
FKRGKILSYVDSDGSSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKALRF
LGANDEEMSFDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMFNDFGDPLQK
FGFEVGPVCFLG
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
gtaacagcattcatcactttagttctggttctgcaggctgccaatgtcagagcagcagat
ccagtggatgtgcttaaagtattagattttcaaaattaccccgaaggagtgacgaaaaca
ccaggattttgcaaaaaccgaagagcatcaaaccccgactctgctttcagagttgccaaa
gaggtccagatcagtgcccccaccacgcagctattccccgatggtgttttccctgaggac
ttctccatcctgaccacagtgcgtccaaagctcggcctccagtccttcttgttgtccatt
tacaaccagcagggagtccagcagctgggcgtggaggttgggcgctcacccgtcttcctg
tatgaggatcagaccggcaagcccgcgccggaggactaccctctctttcgtactttcaac
cttgctgacggaaagtggcaccgtgtggccatcagtgtggagaagaagacggtcactata
atcgttgactgcaagaagaagatcaccaaacctctcctcaggagcgaccatgcttccatc
gacgccaatggcatcactgtgttcggcacgagactcctggatgaggaggtgttccagggt
gacatccagcagctgatgatcgtgcctgaccctaaagcagcttatgactactgtgaacac
tacagcccagactgtgacaccccccacagggactctctgcaggcccaggagccagaggaa
cttgagtacactactgatgatttagattactctcagttctatgattactcagagggagcc
acagacatcatcccaaccgatgaatattctgacccacagccaaacattgtagagggagat
ttcaatacagaatatgactacggaactgtagatggtactcagactcagtccccctatggc
tcgcatggacctgaagaggctgtggaggaggatcttgttggtgcgtttgccaccgaagcc
cctcccccggctctggagcccactgttgtcccagaaacatcagacaacctgaaccctggt
gcggactcatacaactttaaggagtatgatctaaaggagtatgacttgggcgcggttgac
aacaagttgtatgattatggagcgtatgatgagtatggcacagatccttccaaaactgtg
gaggccttcgatgatgaggtggggcctggggtcgctgcagagacagacgtgtctgagagc
gccattgccggtgttggaggagccttcggacagaagggggagaaaggcgagcctgctgtt
atcgaacctggcatgctgatcgaaggacccccaggaccccctggcccagctggactccca
ggtccctcaggtcttcaaggacctccaggccccgctggagatccaggtgacaggggtcct
cccggtcgtgctggtctccctggtgctgatggtttgccaggtcctcctggtaccatgcta
atgctgcctttccgttttggtggagacggtgagaagggtccagtggtgtcagcccaggaa
gctcaggctcaggccatcctctctcaggccagactggccatgaggggccccccagggccg
atgggtttgacaggacgatcagggccagtgggtcttcctggtagtactggactgaagggt
gaaagtggagaccacggtcctcagggtccgcgtggcatccaggggcccgcaggacaatct
ggcaaagctggcaagagaggtcgtgccggtgctgatggagctcgtggaatgccgggagag
ccaggcactaagggtgacagaggctttgacggactccccggcctgcctggtgagaaggga
cacaggggggagcccgggccaatgggacccccaggagcctctggagaggacggacagagg
ggagaggatggcgagattgggcccagaggattggctggcgagagtggtcccagaggtctg
ctgggtcctcgtggtcctccaggaccccctggatctcctggtgttgctggagtggacggg
cctccaggtccaaaaggaaacatgggcccacaaggtgaaccaggcccacctgggcagcag
ggaatcccaggtacacagggtcttccaggtcctcaaggccccattggaccacctggagaa
aaaggaccttctggccggtcaggattacctggattacctggagctgatggacctcctggt
catcctggaaaggagggtccacctggagagaaaggagctcagggtccatcaggtcctcag
ggtcccattggttatcctggccctcgtggtgttaagggagctgatggagtccgtggtctg
aaagggtcaaagggagagaagggtgaggacggtttcccaggtttcaagggagatatggga
atcaagggagaccggggtgagtctggcatgctcgggcctcgaggagaggacggtcctgag
ggtcccaaaggcagagctggtcctaatggagagtctggtccccttggacctgcaggagag
aagggtaaactgggtgttccaggattaccaggttatccaggaagacaaggacctaagggc
tcaagcggtttcccagggttccctggagccaacggagagaaaggagccaggggcattgca
gggaaatctggacccagaggacagagaggacccacgggccctcgtggagctcgaggcgct
agaggtccaacaggaaaaccaggtccaaagggaacgtcaggaaacgatggaccaccaggc
ccgcccggagagagagggcctcaaggacctcagggaccagtaggcttcccaggaccaaag
ggccctcctggacctcctgggaaagatggattgcctggacaccctggtcagcgcggagag
acgggtttccaaggaaaaactggtccaccaggtcctggaggtgtggtcgggccccaggga
ccgactggagagactggtcctgttggtgagagaggccaccccggaccccctggtccaccc
ggagagcagggtcttccaggcggagctggcaaagagggagcaaagggagaccccggacca
caaggacccccaggtaaagatggtccccccggcctgagaggtttccccggagaacgaggt
ctacctggagcagcgggtcctgcaggtctgaagggaggagaggggcctcaaggtcctcct
ggtcctgttggttctcctggagagagaggtcctgctggtcaagctgggccaattggtctg
tctggtagaccgggtcctcagggtcctccaggtcccgctggagagaagggagcacctggt
gagaaagggccttcaggtcctgctggtcgtgacggtgtccagggtcctgttggtctacct
ggccctgctggacctcaaggtccccccggagaggacggtgacaagggagaggttggagag
ccaggtcagaaaggaagcaaagctgacaaaggagaacagggtcctccaggtccagctggt
ctccaaggtcctcctggtgctccaggtcctgctggtgctgatggagagcctggtcccaga
ggtcagcagggaatgtttggacagaagggagatgaaggtcctagaggattcccaggccct
ccaggtcccattggtctgcagggacttcctggaccccctggtgagaagggagagaatgga
gatgtgggccccatgggccctcctggtccccctggccccagaggtcctcagggtccgagt
ggagctgatggtcctcaaggtcctccaggtggtgtcggccccatgggttctgtgggtgag
aagggtgaacaaggtgaggctggaaacccgggaccacctggagagcctggagttggggga
cctaaaggagagagaggtgagaaaggagaggccggaccccctggagctgctggacctgca
ggagccagaggaccccctggagatgacggtccaaagggtaaccctggtcccgttggattc
cccggagaccctggcccccctggagagcctggtgtagctggaactgatggagaagcagga
gagaagggagaggatggagagtctggtcagccgggacctccaggcccatcaggagaggct
ggaccacccggaccacctggcaagagaggacccccgggagctgctggagcagagggcagg
caaggagagaagggcgctaagggcgaagctggctctgagggtccagcaggtaaaaccgga
ccagttggacctcagggacctccaggaaagcccggacctgagggtctgagaggaatcccc
ggccctgtgggagaacaaggactgcccggagccccaggacaggacggtccacctggtccc
atgggtcctcctggtctccccggtctgaaaggtgaccctggctcaaagggtgaaaagggt
caccccggtctgatcggtctaatcggaccccccggtgagcaaggagagaaaggagaccga
ggtttacctggaccacaaggttctcctggcggcaagggcgacagcggtatcagaggatct
tctggtcctctcggtccccctggtccccccggtctgcctggtcctcaaggtcccaaagga
gccaagggttcaagtggtactgctggacctaaaggagacactggtgcagtgggtcctcct
ggtcctcctggccccccgggtgaggtgatccagcccctgcccatccagtctcccaaaaag
accaagcgctccagcgacatgcagtcagacgcagccgccaccatcatggactacggcgag
ggaatggaagacatctttggctcgctcaacaatctgaagcaggacatcgagcgcatgaag
tacccaatgggaacacagaacaacccggccagaacgtgcaaagacctgcagctctgccac
cccgagttccccgacggcgagtactggatcgatccaaaccagggctgctccggagactcc
ttcaaagtttactgtaacttcacagccggaggagaaacctgcatctaccctgataagaag
tccaatgcagtcagaatatcgtcttggcccaaagaagtccctggatcatggttcagtgaa
tttaagcgtggtaaaatactctcatacgttgactcagatggaagctcgataaacatggtg
cagatgaccttcctcagactactgacggcctcagcccggcaaaacttcacctacagctgc
caccagtccgtggcctggcacgacgccaccagtgacagctacgacaaggcgctgcgcttc
ctgggcgccaacgacgaggagatgtccttcgacaataacccgtacatcaaggccctctca
gacggatgtgcgacgaggaagggctacggaaagactgtgatggagattaatactcccaaa
atcgatcaggttccgatcatcgacgtcatgttcaatgactttggggacccgttacagaag
tttgggttcgaagttgggcccgtctgcttccttggctaa
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integrated database retrieval system
