Halichoeres trimaculatus (threespot wrasse): 141808155
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Entry
141808155 CDS
T11192
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03015
mRNA surveillance pathway
htc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141808155 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
141808155 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htc03021
]
141808155 (sympk)
03019 Messenger RNA biogenesis [BR:
htc03019
]
141808155 (sympk)
Transcription machinery [BR:
htc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141808155 (sympk)
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141808155 (sympk)
U7-dependent histone pre-mRNA processing factors
141808155 (sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Cnd1
Adaptin_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
141808155
NCBI-ProteinID:
XP_074550654
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MDSPTDEGDTEAPRVIDMTTSEKVVELLNQAALIATDEKLTVLKQVQELIINKDPSLLDN
FLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDASVNVVKKAILT
LTQLYKVSLQWLVRSKVVSERQEACWDLVTQMKGDVLELLDSENDGVRTHAIKFTESLII
TLSPRTSDSDIPKRQEGDISLDKVPKDHSYIRYDALCEEGKTALERLLKFMVHPAITSIN
LTTALGSLATIARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQISTLLLDLGMPQSEITRSTPAPREQRKRQRHEQYKEGKKVKMEPALIEDDED
KEEPAPLSVPKPAPVPVAQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQTKARDDEAGKEGGDDDDSVSKDLLI
KRKNPAMMMGQAISVVGYQEKAPSQETPATVKRLPEPILPTTQTKLTGASGRKKVFRLSD
VVQPLSETQIEKLTSKAVERILHSEKAIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLGFI
LDDIRTRSDLAFSLLYQEYNTYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLV
LEAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKV
RTTALAFLKRMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETVR
QCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENC
PKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALP
KLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNL
CFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQV
WKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLQHVHSFTPHQQA
HIPASIMSVLEANKKAEPKPIEPVVEKEIESVPDPVEEEAPTAALKGPDTPLQQHHIVRR
EEEPMEQQDPEPVIQDETVDAVSEEDLSRADKTPSPQPEPDETPMDTSQPEPSDLQETEK
DVETDIPGPEAESESEDAE
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggatagtcctacggacgagggggacactgaagcccctcgtgtcatcgatatgaccaca
agtgaaaaggtggttgaactcctgaatcaggctgctctgatagccacagatgaaaaactt
acagtcctcaaacaggtccaggagctcattattaacaaggatccttctcttcttgacaac
ttcttggatgagattattgcttttcagactgacaaatctattgaagtgagaaaatttgtc
attggcttcattgaggaagcttgtaaacgggacaatgagctccttctcaggctgattgct
aatctaaatatgttgctgaaagatgctagtgtgaacgtcgtgaagaaggccattctcaca
ctcacccagctctacaaagtttctctgcagtggctggtgcgatctaaagtggtgtcagag
aggcaggaggcatgttgggatctggtaacacagatgaaaggggatgtactggaattgctg
gactctgaaaatgatggtgtacgcactcatgctattaagtttaccgagtccttaataata
actctttcaccacggacatcagactctgacatccccaaacgacaggagggtgacatcagt
ctggacaaagttcccaaagatcattcgtacatccgttatgatgctttatgtgaggaaggg
aagactgcactagagcgactgctgaagtttatggtgcacccagccatcaccagcatcaac
ctcaccacagcacttggctccctggctactatagcccgtcagaggccaatgttcatgtcc
gaagtagtgcaagcatatgagatgctgcatgcaaacctgccacccactcttgcaaagtct
caggtcagcagtgtgcgaaaaaacctgaagctgcacttagtcgcagtcttgaagcatccc
tgcagcctggagttccagggtcagatcagcactttgctacttgatctgggaatgccccag
agtgaaattactcgatcaacacctgcaccacgagagcagcgcaagaggcagcgtcatgaa
caatacaaagagggaaaaaaggtcaaaatggagcctgccctgatagaggatgatgaggac
aaagaggagccagctcctctctctgtccctaaacctgcccctgttccagttgctcagtct
gccattgacctcacagctgaatttcttcacccattgctcaaccctgagaatgttgctaac
ctggtcctcatcagcatggtgtacctgcctgatgtcatgccagcatccttccaggccacg
tacacgcctgtcgagtctgcaggcactgatgctcaaattaaacatctggctcgtctgatg
gcaacacagatgactgcagcagggatcggtccaggtcttgagcagaccaaagccagagat
gacgaagcaggcaaagagggaggggatgatgacgactcagtcagtaaagacctgctcatc
aagcgtaaaaacccagcaatgatgatgggacaggccatctctgtggtaggttaccaggaa
aaggctccctctcaggagactcctgccacagttaagaggctgcctgaacccatcctccct
acaactcaaacaaaactcacaggagctagtggaaggaaaaaagtgtttcgattgtcagat
gttgtccagcctttatcagaaactcagattgaaaagttgacctccaaagcagtggaacgc
atcctgcattcagagaaggccattgctcagagcggcatgtctcatgtcagagtgaagctc
ctctccaggcttgttacgcagtttgaaggaatgatgaaagaagatgtgctgggattcatt
ctggatgacatcaggacaaggagtgaccttgccttttccctcctctatcaagagtacaac
acttatctcagccagctgccgtctggactgctggacagctatgatcactgtctctacaca
ctgctgtcaggcctgcaggagaaacctgagcagagagatggactttttaccaaactggtc
ttggaggctcccatcatcacagaatcagcgttagaagtgatacgacgttactgtgaagat
gagtctcgagtgtatcttggcatgacgactctgaaggagctcattgtcaaacgaccctca
aggcagtttcagtatcttcatgtacttctggatctcagctcacatgaaaaagagaaggtg
cggaccactgccttggcttttcttaagcggatgtacgagaaggaccacctcagagactac
attgagaagtttgctttgaactacatgcaactcctggtccatcccaaccctccatctctg
ctgtttggggctgacaaagacacagaggtggctgctccttggactgaagagactgtgaga
caatgtttgttcctctacttgtccctgctgcctctaaaccaccgtctggtccatgagctg
gcttctgtctacactgaggctatcgctgacattaagcgcagcgtgctacgagcaatagag
caacctatccgtgggatgggaatgaactcccccgagctgctgctgttggttgaaaactgt
cccaaaggtgcagagacgttagttactcgatgtctgcacattttaacagacaaagtgcct
ccgtctcctgagctggtggagagggtgagagacctctaccacaaacgggttcctgatgtt
cgtttcctcattcccgtcatcaatggtttagaaaagaatgaagtcatccaggctctgccc
aagctgatcaaactcaaccccatagtggtgaaggaggttttcaatcgtcttttgggcact
cagcacagtgaaggcagttcatccgtatcccctctcacaccaggagacctgctgattgca
ttacacaacattgactcgaccaaatgtgacatgaagtccatcataaaagctactaacctg
tgctttggagagaagaatgtttacacctccgaggttttggcggtggtgatgcagcagctg
atggagcagagtccccttcctatgctgctaatgcgaactgtcatccagtccctcactatg
taccctcgactcggaggctttgtcatgaacatcctgtcccgcctcattgtcaagcaggtg
tggaaataccctaaggtgtgggaaggatttgtaaagtgctgccagaggacaaagcctcag
tcatacagtgtgcttctccagcttcctcctgcacagctgacaagtgtttttgaacgctgc
cctgagatgagagagcctctacttcagcatgtccactccttcacaccccatcagcaagcg
cacatccctgcttccatcatgtcggtccttgaagcaaataaaaaggcagaaccgaagcct
atagagcctgtggtggagaaagagattgaatcagttcctgacccggttgaggaagaagct
cccactgcagcactgaaaggaccagatacaccattacaacaacaccacattgtcagaaga
gaggaggaaccaatggagcaacaagaccctgagccagtgattcaggatgaaactgttgat
gctgtttcagaggaggatctttctagagcagacaagacaccatccccccaaccagagcca
gatgagacaccaatggatacgtctcagcctgaaccctcagacctccaggagacagaaaag
gatgtagaaactgacatccctggacctgaggcagaaagtgaaagtgaagatgcagaatga
DBGET
integrated database retrieval system
