Halichoeres trimaculatus (threespot wrasse): 141808832
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Entry
141808832 CDS
T11192
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03013
Nucleocytoplasmic transport
htc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141808832 (upf3a)
03015 mRNA surveillance pathway
141808832 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htc03019
]
141808832 (upf3a)
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141808832 (upf3a)
mRNA cycle factors
P-body specific factors
141808832 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
141808832
NCBI-ProteinID:
XP_074551668
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MRSEKDQSAVGKEKSVVEIQFRDLQRDPDNIPGHLKQKEEKKEVFTKVVIRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EFPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSELGETERGKWEKTGGQMKSK
DLKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDSGDKLGKEDRDDLCNRKERLRNKVSEKDRPAMQLYQPGARNR
KRMSSAGKSYDCIPVGCSPEPGPEHCFDAVTVAAGLEKGFEKSKEEQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagtcggccgtggggaaggagaaaagcgtcgtcgagatccag
ttcagagacctccagagagaccccgataacatccccgggcacctgaagcagaaagaggag
aagaaagaagtcttcacgaaggtcgtgattcgaaggcttccacccaacctgtcaaaggag
cagctggaggagcagctcagtccgcttccttcatacgactactttgagttctttccagcc
gatcagagcctctatcctcacctgttctccagagcgtacatcaactttaaaaaccctgaa
gacatcctgctgttcagagaccgctttgatggatatgtcttcatcgataacaaaggtcag
gagtttcctgctgtggtagagtttgctccctttcagaaaatctccaagaagaagctgaag
aagaaagatgcaaaagcagggagcatcgaagaagacccagagtacaggaggttcctggag
aattactcctgtgatgaggagaagtctatggccaacccagagactctgctgggagagatc
gaggccaaaaccagagagctcatagccaaacggacgacaccgctgctggagtacatcaaa
aataagaaaatcgagaaacagaggataagagaggagaagagggaggagcgcagaagacgg
gagctggagaagaaacgacagagggaggaggagaaaaggaagcgacgggaggaggagaga
cgcaaacgtaaagaagcagagaagcagaagaagttatctgacaaagatatcaaaataaag
ctcctgaagaagagtgacagagacgatgacgtggattcagaccggatgaaggacaaaagt
gagcttggagagacggagagagggaaatgggagaaaactggaggacagatgaagtcgaag
gacctcaaagaaaaagggcagccagagagcgacaaggagcagagagagcagcacggccgc
agacagagagacaaggatcaccgtgggaaggacgaggagaggaagcggcagagacaccac
tacgagttcgataaattcatgcgccgcaaagacgaaaccaagtggggcaaaggttactgc
caggaccgggccaagaaagagggacaccatcatgggtactcgtactgtcctgacagcggg
gacaaactggggaaggaggacagggacgacctgtgtaacaggaaggagcgcctccgaaac
aaggtgagcgaaaaggaccgtcccgccatgcagctctaccagccgggcgctcgcaacagg
aagcgcatgagctcagcaggaaagagctacgactgcatccccgtgggctgctcgcctgag
ccggggcccgagcactgcttcgacgccgtgactgtggctgcggggctggagaaggggttt
gagaagagcaaagaggaacagtga
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