Halichoeres trimaculatus (threespot wrasse): 141809197
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Entry
141809197 CDS
T11192
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
htc
Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141809197 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
htc03041
]
141809197 (ddx42)
Enzymes [BR:
htc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141809197 (ddx42)
Spliceosome [BR:
htc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141809197 (ddx42)
Complex B
141809197 (ddx42)
Complex C
U2 SnRNP specific factors
141809197 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141809197
NCBI-ProteinID:
XP_074552184
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MNWNKGGPGIKRGFGFGGFSLSGKKEEPQLPQKSHTSFGGRGSGGTYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRKQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEEKEKNSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDYDS
DGNPIALTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELTSLTGTQVIELRQKLNLRVS
GAAPPRPCTSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKT
AAFIWPMLVHIMDQKELEEGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGG
SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVRSI
ASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLPMGADK
WGWLTKRLVEFTSSGSVLIFVTKKANSEELASNLTQEGYSLGLLHGDMDQSERNKVISDF
KKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTT
KDTSFAGDLVRNLEGANQGVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERP
GLGAESSERGGGGSSSSSGGGSMLSSSSGYEGFTKTTTGAMGDRMSAMKQAFQAQYKSHF
VAASSGPPKLSTKSNSSSGWTSAGSLSSVPTEAANGSERSQGLSMTMTGFTSAGSLSSVP
TSQTSSLQSYPPPPAPPSQRDSSRDRHSEDRGRDSYHRHSDRSERHSGDDRYGDRDRHGD
RDRDRHSDRDRYSSSSSSRHSESRNGDGSRRDRDERRSERDGGDRGSGEGRDRGGDDSFA
VPEPPKRRKSRWDN
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtataaagcgaggttttggatttggaggattttct
ctttcggggaagaaagaagagcctcagcttcctcagaaatctcatacctcatttggaggc
aggggatcaggtgggacttatgggaagaaccagcagctcccttcattctacaaaataggg
acgaaaagagctaattttgacgaggaaaatgcatactttgaagatgatgaagaggagtcc
agtagcaatgtggacctgccgtacatcccagctgagaactcgcctacaaggaagcagatg
cagtctggtggaggctcagatagtgaagatgatccacttgatgcctttatggcagaggtt
gagaaccaggcagctaaagacatgaagaaacttgaagaaaaggagaaaaattcagccaag
ggtatacgtgatgacattgaagaggaagatgaacaagaagcctacttccgctatatggca
gagaatcctacagctgggctgacccaagaggaagaggaggaaaacattgattatgacagt
gacgggaacccaatcgcactgaccacaaagaaaattatcttaccgctccctcctatcgac
cactctgagattgattacccaccttttgagaaaaacttctacaatgagcacgaggagctc
actagcttgacaggaactcaagtgatagagctgaggcagaaactgaacttgagggtatct
ggtgctgctcctccaagaccatgtaccagtttcgcccactttagctttgatgagcagcta
atgcaccaaatccgcaagtctgagtacactcagccaactccgattcagtgccagggggtg
cccatagctctgtctggtcgggacatgatcggcattgcaaaaactggcagtggcaaaaca
gctgctttcatctggcccatgctggtgcacatcatggaccaaaaggaactcgaggaagga
gaagggcccattgcagtcattgtgtgtcccaccagagagctctgtcagcagatccatgca
gagtgtaagcgtttcggtaaagcctactcactgcgctctgtagccgtgtatggaggaggc
agcatgtgggagcaggccaaagctcttcaggagggagcagagattgttgtgtgcactccg
ggtcgtctgattgaccacgtaaaaaagaaggccacatccctgcagagagtgtcatacctg
gtgtttgatgaggcagatcgcatgttcgacatgggctttgagtaccaggttcgatctatt
gcgagccatgttcgaccagatcgacagactcttctgttcagtgctactttccggaagaag
atagagaggctggctcgggacatcttagtggatccgattcgtgtggtgcagggagatatc
ggagaggccaatgaggatgtaacccaggtggtggagttgctacccatgggggcagacaaa
tggggatggttgacgaagcggttggtggagttcacctcctcgggctcagtactcatcttc
gtcaccaaaaaggcaaacagcgaggagctggcaagcaacctgactcaggagggctacagt
ctgggtctgctgcatggagacatggaccagagtgagaggaacaaggtcatcagtgacttc
aagaaaaagaatctgcccatcctggtggccactgacgtagctgctcgtggtctggacatc
ccatccatccgcacggtggtgaactatgacgtggcacgagacatcgacacgcacacacac
aggatcggtcgaactggtcgtgctggtgagaaaggtgttgcttacactcttctcaccacc
aaagacacatcatttgccggtgaccttgtgagaaatctcgagggagcaaatcaaggtgtt
tcgaaagagctgatggacttggccatgcagaatccgtggttcaggaaatccagatttaag
ggtgggaaaggaaagaagctgaatatcggtggaggaggtcttggttatcgagagaggcct
ggtcttggcgctgaaagttctgaacgtggtggcggtggcagcagcagcagcagtggcggt
ggcagtatgttgtcttcctccagtggctatgaaggcttcactaaaacaaccactggagca
atgggagatcgtatgtctgctatgaaacaagccttccaggctcagtataaaagccacttt
gtggctgcgtccagcggccctccaaagctcagcaccaaatccaacagctcttcaggctgg
accagtgctggcagcctgagctctgtgccgacagaggccgccaatggttcagaacggtcc
cagggactctctatgaccatgactggcttcaccagtgccggctccctgagctctgtgccc
accagccagaccagttcacttcaaagttacccccctccacctgctcctccctcacagaga
gacagctcgcgggacagacacagtgaggacagagggcgcgacagttaccaccgccacagt
gataggagcgagagacacagcggcgacgaccgctacggagaccgagatcggcatggtgac
agagatcgggaccgacacagtgaccgggaccgctacagcagcagcagcagcagccgccac
agcgagagtcgtaacggagatggaagcaggagggacagagacgagcggaggagtgagagg
gatgggggagacagggggagcggggaggggagggacagaggtggagatgacagctttgcc
gtccctgaaccgccaaaacgtagaaagagcaggtgggacaactag
DBGET
integrated database retrieval system
