Halichoeres trimaculatus (threespot wrasse): 141810059
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Entry
141810059 CDS
T11192
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141810059 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htc03019
]
141810059 (patl1)
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141810059 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
141810059 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
141810059
NCBI-ProteinID:
XP_074553482
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MFRFQSLDEDCMLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDEKDGL
GAGLGFGGGGLGGESRLVGAGDSSGSHPPPPSSLPPLKYSSSSAGLPHQDAEDRAGEGDL
AESLARLILEADPAIAGVGAAERPGPPPSSSGTSLSALPGLDRSRVLPQPSSIPHQHPHH
PQHQLPPGPSTSGLPPGPPPSSMLSYQQQQHLLRRGAAPMGQMNSHSIWENSMGFGPVSV
TPGLVTHMEDSPLMSIIKEVGLPKRPPQGRNDEGRDLSERVPPPRSSSPVIGSPPVRAVP
IGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERLSPNTLLNIANSPLCRGPFP
PGVGPVLSQIQRAQLLNSQVAGFPRGGPAPPLLPGGGGFRPFFGGPPPPHGHRMGPPPPH
GPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRSRTGGDRRSRDPYSNLMTQKEKEWV
TKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKRFLQTPEEDREALLEQHKTNTGQLCNSLREKEWEDRVSDELCVMIMSVRKGKRL
ISRLLPFLPSPQAAAVVMAIARNLPALAKKDKQDQVLCWLVEPVSAVIQSLSSSALTDLL
QELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELL
SVPSSSLSPPLFTPPNLLSLLSRYVDRQRLELLQDKLQISALSR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtatgttggaggaggaagatgacggactg
attgaagaggaagatgaaattgatcagttcaatgatgacacctttggggctggggccatt
gatgacgactggcaggaggaacacaaacgcctggctgagctcgatgaaaaggacgggctc
ggagctgggctggggttcggaggaggcgggttggggggggaatctcgccttgtaggagct
ggggattcctctggaagccacccaccacctccatcatcccttcctcctctcaaatactcc
tcatcctctgctggactgcctcaccaagatgcagaggaccgagcaggtgaaggtgacctt
gcagagtctctggccaggctcatcctggaggcagacccggccatcgctggtgtcggggca
gctgagagaccagggcctccccccagttcctcaggaaccagcctgtccgctctgccggga
ctggaccgatccagagtcctgccccagccttcctccatcccacaccagcatccccatcac
ccccagcaccagctgcctccagggccttccacatcagggctccctcctggtcctcctccc
tcatccatgctcagctaccagcagcagcagcatctgctgcgcagaggcgctgctcccatg
ggccagatgaactctcacagtatttgggagaacagcatgggctttgggccggtcagcgtc
acacctggacttgttacacatatggaggatagtcctttgatgtccataatcaaagaggta
ggtcttcctaaaagacctcctcaggggaggaacgatgaaggacgggacttgtcagaaagg
gtcccacctccacgctcgtcttccccagtgattggctcccctccagttagggcggtgcct
ataggaacaccgccaaaacagccaatgagccacgctctgaaccatcagatccaccatccc
acagcggttcatgtgagagccccggtccagcacagataccctcctcctttccccgagcgt
ctgtcacccaacaccctcctcaacatagcaaactctccgctgtgccgcggtccgttccct
cctggagttggtccagttctgtctcagattcaacgggcccagctgctcaactcccaggtg
gctggatttcctcgtggcggtccagctcctcccttattacctggtggaggtggtttcaga
ccgttcttcggggggcctcctcctccacacggtcacagaatggggcctccaccccctcat
ggccccccaaaccacaccccacccatccggcacaacaccacccacctccacccgcagcat
cgtcgcatgctcacgcagcgtatgcagaacagaggaggcgaccgaagcaggactggagga
gaccggcgcagcagggacccctacagtaacctgatgactcagaaggagaaggagtgggtc
accaagatccagatgatgcagttgcaaagtactgacccgtatctggatgactactactac
cagaactactatgaaaagatggagaagcgtcaggaacgagagagagacagcagcaagaag
gagcacactaccaaactgatcactccacaggtggccaaggtggagcacacctacagacca
gttcagtttgctggctctctgggaaaactgacagtctccagcgtcaataacccccgaaag
atgatcgatgctgtggtgacaactcgaacggatgatgaggagaaaagagagaagcaggtt
tggaataagaggaggcagatcctctacactgtggagaagatgtacagtttgctgctggag
gttcaggactttgagaagcgtttcttgcagactcctgaggaggaccgtgaggctctgctg
gagcagcacaaaaccaacacagggcagctttgtaactctctgcgggagaaggagtgggag
gacagagtgagcgatgagctgtgtgtgatgatcatgtctgtgaggaagggcaagcggctc
atctccaggctccttcccttcctgccgtcaccccaggctgccgccgttgtcatggcgatt
gcccgaaaccttcctgcactggctaagaaggacaagcaggaccaggttctgtgctggttg
gtggagccggtttctgctgtgatccagtctttgtcaagctctgccctcacagacctgctc
caggagcttcagggcagcgaggggcagctggccacagttctgcacaacaagtttggtgtg
acgctgctttacctgatcctgagtgagggagagaggatgcagagctccgaccccaactgt
caactcatggacgacaatcgatggactgagttggtgttttcagtgaccagggagctgctc
agcgtcccctcctcctccctttctccccccctcttcacccctccaaacctcctctccctc
ctgtctcgttatgtagatcggcagaggctggagctgctgcaggacaagctacagatctcg
gctttgtccaggtag
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