Halichoeres trimaculatus (threespot wrasse): 141810580
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Entry
141810580 CDS
T11192
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
htc03016
]
141810580 (rtcb)
Enzymes [BR:
htc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
141810580 (rtcb)
Transfer RNA biogenesis [BR:
htc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141810580 (rtcb)
Prokaryotic type
tRNA splicing ligases
141810580 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
141810580
NCBI-ProteinID:
XP_074554365
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKISGTCWRIKKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHRGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctataacgatgagcttcagtacctggagaagatcagtgggacctgctgg
aggattaaaaagggcttcgttcccaacatgcaggtcgaaggaaacttctacgtgaacgac
tccctggagaagctgatgttcgaggagcttcgtaacgcctgtcgaggaggaggtgtgggt
gggttcctcccagcgatgaagcagatcgggaacgtggccgctctgccggggatcatacac
aggtccatcgggctccctgacgtccactctggttatggattcgcgatcgggaacatggcg
gccttcgacatgagcaacccggacgctgtggtgtctccaggtggcgttggttttgacata
aactgcggcgtgcggctgctgaggacgaacctggacgaaggcgacgtgcagccggtgaag
gagcagctggctcagtctctgttcgaccacatccccgtgggggtggggtcaaagggggtc
atccctatgggagccaaggacctggaggaggctctggagatgggggtggactggtccctg
agggaggggtacgcctgggccgaggacaaggagcactgtgaggagtacggcaggatgctg
caggccgaccccaacaaggtgtcctccaaggccaagaagaggggcctgccacagctgggg
actctgggagcaggaaaccactacgcagagatccaggtggtggacgagatctacaacgac
tacgcggcgaagaagatgggcatcgaccaccgaggtcaggtgtgtgtgatgatccacagc
ggcagcagagggctgggacatcaggtcgctacagacgccctggtcgccatggagaaggcc
atgaagcgggataagatcacggtgaacgaccggcagctggcgtgcgctcgcatcacgtcc
caggagggtcaggactacctgaagggcatggccgctgctgggaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggcgttctctaaagtgttcaacaccacgcca
gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatggtggacgggaagcagaggacgctgctggtccaccgcaaaggctccacccgcgcg
ttcccgccacaccacccgctcatccctgtggactaccagctgacgggtcagccggtgctg
atcgggggcaccatggggacctgcagctacgtcctgacggggaccgagcagggcatgacg
gagacgtttggcaccacctgtcacggagcgggccgggctctgtctcgagcaaagtctcgc
aggaacctggacttccaggacgtcctggacaaactggccgatcagggcatcgccatcagg
gtcgcctcccccaaactggtgatggaggaggctccagagtcgtacaaaaacgtgacggac
gtggtcaacacgtgtcacgacgccgggatcagtaagaaggcgatcaaactgaggccgatc
gccgtcatcaagggatga
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