Halichoeres trimaculatus (threespot wrasse): 141811196
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Entry
141811196 CDS
T11192
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03020
RNA polymerase
htc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141811196 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
141811196 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htc03021
]
141811196 (polr2a)
03400 DNA repair and recombination proteins [BR:
htc03400
]
141811196 (polr2a)
Enzymes [BR:
htc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141811196 (polr2a)
Transcription machinery [BR:
htc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
141811196 (polr2a)
DNA repair and recombination proteins [BR:
htc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
141811196 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
141811196
NCBI-ProteinID:
XP_074555265
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVSKIMKVLRCVCFFCSKLLVDAN
NPKIKDILMKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPCIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDHILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRTLQEDVVKDVLTNAHVQSALEREFEKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVDGVHDLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgaacttaaacggatgtcagttacagaagggggtatcaaa
tacccggaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaaggcaa
ggggtcatagaaagatctggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggccacttcggacacatcgagctagcgaaaccggttttccacgtgggcttcgtgtcaaag
atcatgaaggttctgcgatgtgtctgctttttctgctccaagcttctggtggatgctaac
aatccaaagatcaaagacatcctgatgaaatctaaaggacaaccaaggaagcgtctgaca
catgtgtacgagctgtgcaaaggtaaaaacatctgcgaaggtggagaggagatggacaac
aaatttggtatggagcagcaggagacagaggaggacatcactaaggaaaagggccacggt
ggatgtggacgctaccagccatgcatcagacgctctggcttggagctgtttgcagagtgg
aagcacgtcaacgaggactcacaggaaaagaagatcttgctgagtccagagcgtgtccat
gagatctttaagcgcatctcagatgaagaagaccacatcttgggaatggaccccaagttt
tcccgaccagagtggatgattgtgactgtgttgcctgtccctcctctggctgtcaggccg
gctgttgtcatgcagggctctgctcgcaaccaggatgacttgacccacaagcttgctgac
atcgttaagatcaacaaccagctgaggagaaacgagcagagtggtgctgcagctcacgtc
atagctgaagacgtcaaacttctccagtttcatgttgccaccatggtggacaacgagtta
ccgggccttcctagggcaatgcaaaagtctggccgccctctcaaatccatcaaacagcgt
ctaaaggggaaggagggtagagtccgaggtaacctgatggggaagcgtgtagacttctct
gcccgaactgtcatcaccccggaccccaacctgcaaatcgaccaagtgggcgtcccgcga
tccatcgccgccaatatgacctttcctgaaatcgtcaccccttttaacatcgacagacta
caggagctggtacgaagaggcaacagccagtacccaggagcaaaatacatcatccgtgac
aacggagacagaattgacctccgattccaccccaaaccaagtgaccttcatctacagatt
ggctacaaggtggaaagacatatgtgtgacggggacatcgtcatcttcaaccgacagccc
acactacataaaatgtccatgatggggcacagagttcggattctgccgtggtctacgttc
cgactcaaccttagtgtcaccaccccatacaatgctgactttgacggcgacgagatgaac
ctccacctgcctcagtctctggagacaagggcagagatccaggagctggccatggtacct
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtattgtgcaggacacactc
acggctgtgcgcaaattcaccaaaagagacgtcttcttagagaggggtgaagttatgaac
ctcctcatgttcctctccacctgggacgggaaagtgcctcagccggccatcctgaagccg
cgccccttgtggacggggaagcagatcttcagcttaatcattcctggacacattaacgtg
atccgaacacacagcacacaccccgatgatgaagacagcgggccttacaaacacatttca
ccaggagacacaaaggtcattgtggagaacggcgagttgatcatgggaatcctgtgcaag
aaatctctgggaacctccgctggctccctggtccacatctcctacctggagatgggacat
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccatcggtattggtgactccattgctgacgctaaaacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaggttatcgagaaggcccacaac
aacgagctggagccgacccccggtaacactctgagacagaccttcgagaaccaggtgaac
cgcatcctcaacgacgctcgtgacaaaacaggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccggttcgaagggttcaaagattaacatctca
caggttattgccgtggtggggcagcagaacgtggagggtaagcgaatccccttcggtttc
aaacaccgcacgctgcctcacttcattaaagatgactacggtcctgagagcagaggcttc
gtggagaactcctacctggctggtctcacaccaacagagttcttcttccacgctatggga
ggcagagagggtctgattgatacggccgtcaagactgctgagactggttacatccagcgt
cgtctgatcaaatctatggagtctgtgatggtgaagtatgacggcactgtgcgtaactcc
atcaaccaggtggttcagctgcgttacggagaggatggcttggcgggagagaacgtcgag
ttccagaacgtggcgactctcaaaccttcacacaaggcctttgaaaagaagttcaagttt
gactgcaccaacgagcgagcgctgagaaggacgctccaggaagacgttgtcaaagatgtc
ctcactaacgcccatgtgcagagcgccttggaaagagagtttgagaagatgaaagaagac
agagaggtcctccgagcgatcttccccactggtgacagcaaggttgtgctgccgtgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacactcggactcctaca
gatctaaatcctctcagggtggtcgacggtgttcacgacctgagtaagaagctggtgatc
gtgaacggtgaagacccgctcagcagacaggcccagcagaacgccaccctcctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgactgaagagttccgcctttccacg
gaggccttcgactggctcctgggagaaatcgagaccaaattcaaccagtccattgctcac
ccaggtgaaatggtcggcgctctggctgcccagtcgctgggagagcccgccactcagatg
accctgaacactttccactacgccggtgtgtcggctaagaacgtaacgctgggtgtgcct
cgtctgaaggagttgatcaacatctccaagaggcctaaaaccccctcgctgacggtcttc
ttgctgggtcaggctgcacgtgacgctgagagggccaaggacatcctgtgtcgtctggag
cacacgacactaagaaaggtgacagccaacactgcgatctactacgaccccaacccacag
aacacggtggttgccgaggaccaggagtgggtgaacgtctactatgagatgcccgacttt
gacgtgacccgcatttcaccgtggctgcttcgtatcgagcttgatcgcaaacacatgact
gatcgcaagctgactatggagcagatcgcagagaagattaacgcaggttttggagacgat
cttaactgcatctttaatgacgacaacgcagagaaactcgtcctgcggatcaggatcatg
aacagcgacgagaacaagttccaagaggatgaagaggtggtggacaaaatggatgacgat
gtgttcttgagatgcatcgagtccaacatgctgactgacatgactctgcaaggcatcgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcataatc
acagaggacggtgagttcaaggccctccaggagtggatcctggagacggacggagtcagc
ctcatgagagtcctcagcgagaaagacgtagacccagtcaggaccacgtctaacgacatc
gtggagattttcacggtcttgggaatcgaggctgtacgaaaggctctggaaagagagttg
taccacgtcatctcgtttgacggttcctacgtcaattaccgtcacttggctctgctttgt
gacaccatgacatgccgcggtcacctgatggccatcacacgtcacggcatcaaccgacag
gacacaggaccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccatggcgagagcgaccccatgaagggtgtgtcagagaacatcatgctcggtcag
ctcgctccagccggtacaggctgcttcgacctgctgttggatgccgagaagtgtaaatac
ggcatggagatcccgaccaacatacctggaatcagcgtggcaggacccactggaatgttc
ttcggcaccgtaccaagtcccatgagcggtatgtcacctgccatgaccccctggaacact
ggagcgaccccagcttatggcgcctggtctcccagcgttggaagcggcatgacacctgga
gcagcaggtttctctcccagtgcagcgtcagatgcaagtggtttctctccaggctactcc
ccagcttggtctccgactcctgggtctccaggatctccagggcctgcaagtccatacatc
ccatctccaggtggagcaatgtcaccaaactactcacccacctcccctgcctacgagccc
cgctcccccggtggctacaccccacagagccccggctactccccgacgtccccatcctac
tcccccacctctccctcttactcccccaccagcccaaactacagcccaacatctccctcc
tactcacccacctctccttcttactccccgacttctccatcatactcgcccacttctccg
tcatattccccgacgtctccttcctactcccccacctctccttcctactcccccacatcc
ccgtcatactccccgacgtcaccgagctacagccccacgtcgccaagctacagccccacg
tctccttcctactcacccacttcaccttcttactcacccacttctccttcttattctccg
acatctccatcttactcccccacctcgccgtcttactcccccacatccccgtcatactcc
ccgacttcaccaagctacagccccacttcgccgaactacacacccacctcaccgagctac
tcccctacttcgccctcttactccccaacgtcaccctcctactccccaacctcccccaac
tacacccctaccagccccaactactcccccacctctccctcttactcccccacctcccca
tcctactctccatccagtccacgatacaccccgcagtcgcccacctacacacccagctcc
ccttcatacagcccaagctcgccttcctactccccaacctcccccaagtacaccccaact
tcaccctcatacagccccagctccccggagtacactcccacctctccaaaatactccccc
acctcaccaaagtactcccctacatcaccaaagtactcaccgacttcccccacatattct
cctacgactccaaaatacagccccacctccccaacctactccccgacttctcccacatac
acccccaccagccccaaatactccccaacttctccgacctactccccaacttcacccaag
tactcccccacgtctcctacatactcgcccactagccccaaaggctccacctacagcccc
acgtcaccaggatacagccccacctccccgacctacagcccggccatcagccctgacgac
agcgacgaggagaacaactaa
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integrated database retrieval system
