Hydrogenobacter thermophilus: Hydth_1015
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Entry
Hydth_1015 CDS
T02106
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hte
Hydrogenobacter thermophilus
Brite
KEGG Orthology (KO) [BR:
hte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hte03016
]
Hydth_1015
Enzymes [BR:
hte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Hydth_1015
Transfer RNA biogenesis [BR:
hte03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Hydth_1015
Prokaryotic type
tRNA splicing ligases
Hydth_1015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADO45409
UniProt:
D3DI24
LinkDB
All DBs
Position
complement(930503..931945)
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AA seq
480 aa
AA seq
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MGLKDNLLRLSDYVYVLSENTVKGQRVPVYFYLSDKLFEHLEEDAIRQAANAATLPGVEK
AIYVMPDVHVGYGFPVGGVMGVNTDEGVISPGSIGYDINCGVRLIATHLSEERIKPIRQE
LMKEILSKVPAGVGSTGRLKLSKEQLKEVAIKGARWAVEHGFGLEEDLLHIESSGTLANA
DPDKVSNFAYERGSEELGTVGSGNHFVEVQTVDEIYDEQIAKRLGLGKGQITIMVHSGSR
GFGHQVCVDYLKVAKDALEKYRIEIPDMQLACMPFKSKEGQDYFKAMNAAANYAFANRQI
LGFITADVIRRFLGISWEELGYRVIYDLAHNIGKIEKYTIDGKDKELLIHRKGATRAFPP
YNPDVPPAYRDIGQPVLIPGDVGRYSFLLVGTHKSMEISFGSACHGAGRLMSRTKAKEYV
KREGIEKVLEGLVVVARGKGTVMEEVPQAYKDVTEVVRVVHELGIAKLVARFKPLGTLKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgaaagataacctccttcgcctttctgattatgtttatgttctgagcgaaaac
actgtaaagggtcaacgcgtccccgtttacttttacttgagtgataaactctttgaacat
cttgaagaggatgccataagacaggctgctaatgcggcaaccctcccaggtgttgaaaaa
gctatatatgttatgccagatgttcatgtaggttatggctttcctgtaggtggtgttatg
ggagtcaacacggatgaaggtgttataagtccgggatccataggctacgatattaattgt
ggcgtaaggctcatagctactcatctttctgaggagaggataaaacctatcagacaggag
cttatgaaagagatactaagtaaagtgccggcaggggttggttcaacaggaaggctgaag
ctatcaaaagaacaactcaaagaggttgccataaaaggtgcaagatgggctgtcgagcac
ggctttggtcttgaagaagaccttctgcacatagagagctctggcacgcttgctaatgcg
gatcctgataaggtttcaaactttgcttacgagagaggttctgaggagcttggtactgtt
ggctctggaaatcactttgttgaggtgcaaactgttgacgagatatacgatgagcagata
gctaaaaggctaggacttggcaagggacagataaccattatggtacactcaggttcaagg
gggtttggacatcaggtatgcgttgattatctcaaggttgccaaggatgctcttgagaaa
tatcgcatagaaataccggatatgcagctcgcctgcatgcccttcaagtcaaaagaggga
caggactactttaaagctatgaatgcggcggcaaattatgcttttgccaacagacagata
ctgggctttatcaccgcagatgtcataagaagatttttaggtatatcttgggaagagctc
ggttaccgagtcatatatgaccttgctcacaacataggaaagatagaaaagtacaccatt
gatggtaaagataaggaacttttgatccatagaaaaggcgcaacaagagcctttccacca
tacaatccagatgtgcccccagcatacagagacataggtcagcccgttttaattcccggt
gatgtagggagatattccttccttctggtaggtacgcacaagagcatggaaataagcttt
ggaagcgcttgtcacggagctggacggctcatgtctcgtacgaaagccaaagagtatgtg
aagagggagggtatagagaaggtacttgaaggtcttgtggtggtagccagagggaaaggt
acagtaatggaagaagtgccccaagcatacaaagatgtaacagaagttgtgagagttgtg
catgagcttggtatagctaagcttgtggcgaggttcaaaccactggggactttgaaaggt
tga
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