Hydrogenobacter thermophilus: Hydth_1250
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Entry
Hydth_1250 CDS
T02106
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hte
Hydrogenobacter thermophilus
Pathway
hte02020
Two-component system
hte02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hte00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hydth_1250
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hydth_1250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hte03021
]
Hydth_1250
Transcription machinery [BR:
hte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hydth_1250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
LacI
HTH_23
Sigma70_r4
Sigma54_AID
HTH_3
HTH_31
HTH_17
DUF7769
HTH_Tnp_ISL3
HTH_29
MarR_2
HTH_21
Arg_repressor
Imm5
Ig_6
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADO45638
UniProt:
D3DIR0
LinkDB
All DBs
Position
complement(1141242..1142393)
Genome browser
AA seq
383 aa
AA seq
DB search
MVRGELKTTVKPKLSLSVLLKQDVELLNKNSEQLEQILEEEEKQNPYITHVVKRTPRWFF
QEQDKKPKEAVARNSLMEEISKQISLEFDHIDKEIALEILYRCDENGFFKDSIEEIARLY
GVSSEYVEDIREFIMTEIEPVGVASRNLEEFIKVQLQEMYPKQVEFHERVLNAIKTGKLD
EDVKEAISHLRLKPIEDEGSASAVARVDLLLEHDGENWYIFIQEDFLELQIEEDAHPQDD
IEKEKLRRAKNIKLILDIRRRVLRHIGEAIVKRQEGFLLRNEPLKTLTVKEVAESSQVSM
STVSRIINSRYAKTPAGIYPLRFFFVKESKVGMSKEELMRAIKEVLQENTSISDGKVAQM
LKGRGIDIARRTVAKYRKLLGLR
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggtaagaggcgagctcaaaacaactgtcaaacccaagctaagcctttcagtgcttcta
aagcaagatgtggagctgttaaataagaactctgagcagttggagcagatacttgaggag
gaggaaaaacaaaatccttatataactcatgtagtcaagcgcacacccaggtggttcttt
caagagcaagataagaaaccaaaagaggctgtagcaagaaatagcctaatggaggaaatt
tcaaaacagataagccttgaatttgaccatattgataaggagatagctcttgagatctta
tacagatgcgatgagaacggatttttcaaagattccatagaagagatagcaaggctttat
ggagtaagtagcgagtatgtggaagacataagggagtttatcatgacggaaatagagcct
gtgggtgttgcctccagaaatttggaagagtttataaaggtgcaattgcaagagatgtat
cctaagcaagtggaatttcatgagcgtgtgctaaatgccataaaaacaggaaagctggat
gaagatgtgaaagaggcaatctcccatctgaggttaaagcccatagaagacgaaggctcg
gcttcggcggtagcaagagtagacctacttttggagcatgacggggaaaactggtacatt
ttcatacaggaagactttttagagttgcagatagaagaagatgcacatccgcaggatgat
attgaaaaagaaaaactcagaagagccaaaaacataaagcttattcttgacataagaagg
agggtgctccgacacataggtgaggctattgtaaaaaggcaggaaggtttcttgctaaga
aacgaacctctcaagacgctcacggtgaaagaagtggcagaaagttcacaagtgagcatg
tcaacggtaagcaggattatcaattccagatacgccaaaacacccgcaggcatctaccca
ctgcggttcttttttgtgaaggagagtaaagtaggtatgagcaaagaggagctgatgaga
gccataaaggaggtgcttcaggagaatacatccatcagtgacggcaaagtggcgcagatg
ctaaaaggtagagggatagacatagcgagaaggacggtagccaagtatagaaagcttttg
ggactaagatga
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