Hydrogenobacter thermophilus: Hydth_1285
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Entry
Hydth_1285 CDS
T02106
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hte
Hydrogenobacter thermophilus
Pathway
hte03410
Base excision repair
hte03430
Mismatch repair
hte03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hydth_1285
03430 Mismatch repair
Hydth_1285
03440 Homologous recombination
Hydth_1285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hte03400
]
Hydth_1285
DNA repair and recombination proteins [BR:
hte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Hydth_1285
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Hydth_1285
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hydth_1285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
GLUCM-like_C
Toprim
Motif
Other DBs
NCBI-ProteinID:
ADO45673
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All DBs
Position
1178410..1180062
Genome browser
AA seq
550 aa
AA seq
DB search
MKGISGRDWLILSHLIKPQRQMEEKYGYLIAQILANRNLDDKIFDNRLRNLLPYHLIPNI
EQAVEKIARSVKEGKRIVIYGDYDVDGVTGSAILYDFLKKAGAKVYAVLPTRQTGYGLRK
ELVETFSKYAQLLITIDNGTTAIEELKDPPIETIVVDHHNPHEELPNALVVNPKIDEGLP
NELKEISSVALSFYLVARLRRELEVDVDVRDYLYLTSIGTIADVMPLNPLNRILVSNGIR
MLNYIASGGETKAYGIKVLMESIGIRGEVTSRDIAFSIAPRLNAPGRVSKPSIAMNLLLS
KDENTARMWLKKVEEANEQRKYISNVAFEKAMSEITSKKDRNFLVVRMGEWASGVAGIVA
GKLSSMLSKPSAVFSVGKDLATASVRGVEGINVYEGLKKLSHMFLRWGGHTSAAGLTIRK
EHLDEFEMMIDQVFSEIKGEEPRLYIDMILDPTHVDEGVLRSLKMLEPYGEGFPQPVFVS
EPLRIEKIEENNGRWLLKAQPNINFFAYNVQWRKNIENILFSKRRVVYTVDTRRSNFFNL
VDVEDLNGSG
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtatatctggaagggattggctaatactgagccatcttataaaaccccaaagg
cagatggaggaaaagtacggatacttgatagctcagatacttgccaacagaaacttggat
gacaagatttttgacaaccggctaaggaatctgcttccttatcacctcatacccaacata
gagcaagctgtggagaagatagcaaggagtgtaaaggaagggaagagaatagttatatac
ggggactacgatgtggatggtgtaacgggaagtgccatcctttatgactttttaaaaaag
gccggagctaaggtctatgctgtgcttcccacaagacagacaggctacggacttagaaaa
gagctggtggagactttttctaagtatgcccagcttctgatcaccattgataacggcact
acggctattgaggaactcaaagaccctccaatagaaaccatagtagtggaccatcacaat
ccccacgaagagcttcccaatgcgctggttgtaaacccaaagatagacgaagggttaccc
aacgaactaaaggaaatatcctcggtagccttgagcttttatttggtggcaaggctcaga
agagagctggaagtagatgtggatgtaagagattacctttaccttacctccataggcacc
attgcagatgttatgccactcaatcctctgaatcgcatacttgtatccaacggtatcagg
atgctaaactacattgcatcaggtggggagacaaaagcttacggtataaaagttttaatg
gagagcataggcataaggggcgaggtcacctcaagggacatagccttctctatagctcca
aggctcaacgcaccgggcagagtttcaaaaccgagtatagccatgaacttgctcctatca
aaggacgaaaatactgccagaatgtggcttaaaaaagtggaagaggcaaacgagcagaga
aagtatatctccaatgtagcttttgaaaaagctatgagtgaaataacttccaaaaaggat
aggaactttcttgtggtgcgtatgggcgagtgggcaagtggagtggctggcattgtggca
ggcaaactttcaagcatgctttcaaaaccttctgcggttttttccgtaggtaaagacctg
gcaaccgcttccgtaagaggcgtggaaggtataaatgtttacgaggggctaaaaaagctt
tcacacatgtttttaaggtggggagggcacaccagcgctgcaggtctaaccataagaaaa
gagcatctggacgagtttgaaatgatgattgaccaagtgttttcggaaataaagggagaa
gaaccaagattgtatatagacatgatcctggaccctacccatgtggatgagggtgttctc
agaagtctcaagatgcttgaaccttacggtgaaggctttccgcagccagtgtttgtatcc
gaacctctgaggatagagaagatagaggaaaacaacggtagatggcttttaaaagcccag
cctaacataaatttctttgcttacaatgttcaatggagaaagaacatagagaatatcctt
ttctcaaaaagaagggtagtttatacagtagataccagaaggagcaattttttcaacctt
gtggatgtggaggacttaaatggctctgggtaa
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