Hydrogenobacter thermophilus: Hydth_1456
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Entry
Hydth_1456 CDS
T02106
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
hte
Hydrogenobacter thermophilus
Pathway
hte02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hte00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hydth_1456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hte03021
]
Hydth_1456
Transcription machinery [BR:
hte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hydth_1456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Turandot
Sigma70_ner
ER
Motif
Other DBs
NCBI-ProteinID:
ADO45840
UniProt:
D3DJB6
LinkDB
All DBs
Position
complement(1339784..1341496)
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AA seq
570 aa
AA seq
DB search
MLSKDNIKKLMELGEKGYVTYDEINEALGEDVVDSEAYEEIMDFLQERGVRIIESEEITE
ELEHGDEFTVSTENLLLTARDGDPVKLYLREMGRIPLLSREEEIMYAKQIEMGRKIMRRG
LLRTSFLIDRVLREWGNVCNGKIKATDLMDTMDESKTVEEYEESHEHLERYFIEKGLELA
KAYKEALVWRELYLKYQTPEDKRKYLEKHAKMNRVLKDMKLKYSKFEKIADELLNLYKRY
TKRLKEYEARRKKLESIYPNVEELIKFYDQRQDLQLRAERAGYGFARFQVLRSEYLTLER
EVKELRKELGVLPEELDRVMHIIKEGRTKVTKAKQVMVKCNLRLVVSIAKKYVNRGLHFL
DLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETIND
ITKAHKKLFQELGREPFPEEIAKYLGISVEKARKVMRTSQEPISLETPIGDDEETHLKDF
IEDKSVLSPEEQVSRKLLREQLIKVLSTLGEKEKEILMYRYGLVDGTEYTLEQIGKMFNV
TRERIRQIETKAIRKLRHPARAKYLKDFEI
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtaaggacaacataaaaaagctcatggaactcggtgagaaagggtatgtaacc
tatgacgagattaacgaagctttaggggaagatgttgttgattcagaagcatacgaagag
atcatggacttccttcaggaaaggggcgtaaggatcatagagagtgaagaaataacagag
gagctggagcatggcgacgagtttactgtgtcaacggaaaacctccttctgaccgcaaga
gatggcgacccggtaaaactttatcttagagagatgggaaggataccccttctgagtagg
gaagaggagatcatgtacgcaaaacagatagagatggggaggaagatcatgaggcgaggg
cttttgagaacttcctttcttattgaccgggtgttgagagagtggggaaatgtttgcaac
ggaaagataaaagctacggacctgatggatacaatggatgagagcaaaacggtggaggag
tatgaggagagccacgaacaccttgaaagatacttcattgaaaagggtcttgagcttgca
aaggcatacaaagaagcgcttgtctggagggagctttaccttaaatatcaaacaccagaa
gacaaaaggaagtatcttgagaaacatgccaagatgaacagagtattaaaggatatgaaa
ctcaagtattccaagtttgaaaagatagcagacgaacttttaaacctgtataaaaggtac
accaagaggttaaaagagtatgaagcaagaaggaaaaagttagaaagcatatatcccaat
gtggaagagctgataaagttttacgatcaaagacaggacctgcagctcagggcagagagg
gcgggttatggatttgccagatttcaggttcttaggagtgagtatctaacccttgagagg
gaggtaaaagaacttagaaaagagttgggggttttgccagaggagctggatagagtaatg
cacatcataaaggaaggcaggacaaaggtaacaaaagcaaagcaagttatggtcaagtgt
aacctaaggctcgtagtgtctatcgctaaaaagtatgtcaacagaggtttgcactttctg
gaccttatacaggaaggcaacataggtcttatgaaggcagtagacaagtacgattacaga
aaaggttataagttttccacctatgccacatggtggataaggcaggctataacccgggct
atagcggatcaggcgcggaccataagaataccagttcacatgatagaaaccatcaacgac
attacaaaggctcacaaaaaactctttcaggagctggggcgcgaacctttccctgaggag
atagctaaatatctgggcatatcggtggaaaaggcgaggaaggttatgagaacttctcaa
gagcctatatctcttgagacacccataggggacgacgaagaaactcacctcaaagacttt
atagaagacaagagtgtcttatcacctgaggagcaagtttcaagaaaactcctcagggaa
cagcttataaaggtgctaagcactttgggagaaaaagaaaaggagatcctcatgtacagg
tatggacttgttgatggtacagagtacaccttagagcagataggcaagatgttcaatgta
actagggagaggataagacaaatagaaaccaaagctataagaaaactcaggcatcccgca
agagctaagtatctgaaagattttgagatatga
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