Hydrogenobacter thermophilus: HTH_0857
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Entry
HTH_0857 CDS
T01167
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hth
Hydrogenobacter thermophilus
Pathway
hth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HTH_0857 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hth03021
]
HTH_0857 (rpoC)
03400 DNA repair and recombination proteins [BR:
hth03400
]
HTH_0857 (rpoC)
Enzymes [BR:
hth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HTH_0857 (rpoC)
Transcription machinery [BR:
hth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HTH_0857 (rpoC)
DNA repair and recombination proteins [BR:
hth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HTH_0857 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAI69317
UniProt:
D3DHL5
LinkDB
All DBs
Position
complement(794307..799007)
Genome browser
AA seq
1566 aa
AA seq
DB search
MRKGLLPFEKIKLMLASPEEIRSWSYGEVKKPETINYRTHKPEKDGLFCAKIFGPIKDYE
CLCGKYRGKRFEGTICDRCGVEVTKSYVRRKRFGHIELAAPVAHIWFLKSSPSKIATLLN
LSTRDAERVVYFESYLVIEYPISEEEEKKFEEMEDTIPIKDDIGNTKFVKLYVVDEDRYM
SEYATSLEHRYEGGMGAEIIKKVLSSLDLQAYARKLREEIKPYSLGFEDLGKHLEEKHKK
IYHRIVKVIAEDFRLYGVEIKHPDDMTLEQALLGILNEEYYLNIQTGELLSEDGGEDCLT
GREALREYYERVKERKRELPVFEKIKEDIRSAVLKEVSEAKVRKAIRVLKLVEDFIKSGN
RPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDLYRRIINRNNRLKRLIELDAPEIII
RNEKRMLQEVVSALIDNGKRGRVVTQNGRALKSLSDYLKGKQGRFRQNLLGKRVDYSGRS
VIVVGPELKMHQCGLPRIMALELFKPFVYRRLEEKGYATSIKNAKKLVEQKTAEVWECLE
EVVKQHPVLLNRAPTLHRMSIQAFEPVLIDGKAIQLHPLVCPPFNADFDGDQMAVHVPLG
ITAQLEAYILMLSTQNIISPAHGKPITMPSQDMILGVYYITQEVPGAKGEAKLFFSKEEV
LLALENQKVDMHARIKLRLEDGKLIETTPGRVLFNSILPEGHPFVNEPLDKKKVSKLITN
IYNKYGTERTAKFLDDLKELGFNMATKAAISISVDDLQIPKVKKDILKESFQQADEIIDQ
YMKGLLTNKERYNRIIDLWSEITDRVSKAMFEEIEKSQRKEGEKVYPGIFNPIYMMANSG
ARGNRDQIRQLAAMRGLMAKHTGEFIETPIISNFREGLSVLEYFISTYGARKGLADTALK
TAFAGYLTRRLVDVAQDIMITEHDCKTHRGIDMTAIVEGGEEKVPLKDRIIGRTLAEDIV
DPYTGEVIAKRNQIVDEGLADRIAHAGIEKVKVRSPLTCEAKFGVCAMCYGWDLSQRKLV
DVGEAVGIIAAQSIGEPGTQLTMRTFHIGGAAVAERVQNVLTCETSGRIKYYNMKLIKNK
EGKLINISKDAAIAVLDKDSRPVERHSVPYAATIHVEEGQEVKEGTILAEWDPFNTYIIA
EEGGKVEFKDIVLDVTVKEERDPLSGKTSTVVSFTRPKDAMLHTPRLVVATPDGRELTYD
LPVNSILNIPPEHIQLEWSICPTCSESEGTEIQHKYYVVKGYQVSPGDVLARIPKEMAKV
RDIVGGLPRVEELFEARKPKNPAILTEIDGTVRIYEDADEVILYNPKTGETRKYDIKKDE
YILVSHGQYVQKGSNITESVKAEIDGQVRIKGRGYKIVVYNKDTGLQREYFVPKGKHLLV
KNGDTVSAGDPLTDGTPVPEEILRIKGIDELQKFLLKEVQMVYRLQGVDINDKHFEIIIK
QMLRKRRVVDPGDSRFLVNEEVDMEDLEQEVERIKEEGGKLPKVEPILVGISKAALTARS
WISAASFQETPKVLTDASCEGKVDDLRGIKENVIIGNLIPAGTGAGKYAVVKVIEETKAK
ALKDVL
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagggacttcttccctttgagaagataaaacttatgctggcttcgccagaagag
ataagaagctggagttacggggaggtcaaaaagccagaaaccataaactacagaactcac
aagccggaaaaggatggactattctgtgccaagatattcggtcccataaaggattacgag
tgtctgtgtggaaagtacaggggtaagaggtttgaaggcaccatatgcgacaggtgcggt
gttgaggtgaccaaatcttatgtgaggagaaagaggttcgggcacatagagcttgccgcg
cctgtagctcacatatggtttctcaaaagctctccatccaagatagccacccttctcaac
ctgtccacaagggatgcggagagggtggtttactttgagtcttacctggttatagagtac
ccgataagcgaggaggaggagaaaaagtttgaggagatggaagacaccatacccataaag
gacgacataggcaataccaagtttgtaaagctctatgttgttgacgaagacaggtacatg
agcgagtacgccacaagcttggagcacaggtatgaagggggtatgggcgcggagataata
aaaaaggttctttcctctcttgaccttcaggcttacgccagaaagctaagggaggagata
aaaccttacagccttgggtttgaggaccttggcaaacaccttgaggaaaagcacaagaaa
atataccacaggatagtaaaagttatagcggaagacttcaggctgtacggagtggagata
aagcatcctgacgacatgacgctggagcaggcactactgggcatattgaacgaagagtac
taccttaacatacaaaccggtgagcttctttcggaagatggcggagaggactgtcttaca
ggcagggaagcgcttcgcgaatactacgaaagggtaaaagagaggaaaagagagcttccg
gtttttgaaaagataaaggaagacataaggtcagcggttctcaaagaggtctccgaagcc
aaggtaaggaaggctataagggtgctaaagctggtagaggactttataaagagcggcaac
agacccgagtggatgatactggaagtgcttcccgtacttccccccgagctaagacccttg
gtagctcttgacggaggaagatttgctacctccgaccttaacgacctatacaggagaatc
ataaacagaaacaacaggctcaaaagacttatagagcttgacgcacccgagataatcata
aggaacgaaaagaggatgcttcaggaggtggtcagcgctcttatagataatggcaagcgc
ggaagagtagtgacccaaaacggcagagccttaaagtccctctcggactatctgaaagga
aagcagggaagattcagacagaaccttctgggcaagagggtggattactcgggcagatcc
gtcatagtggtgggaccggagcttaaaatgcaccagtgtggacttcccagaattatggct
ctggaacttttcaaaccttttgtttacaggaggcttgaggagaaaggttacgcaacttct
ataaagaatgccaagaagttagtggagcaaaaaactgcggaggtctgggagtgccttgaa
gaagtagtgaaacagcaccctgtgcttctaaaccgtgcacccacccttcacagaatgtcc
atccaggcttttgagccagttctcatagatggcaaagctatacagctccatcctcttgtg
tgtccacctttcaacgcggactttgacggagaccagatggctgttcatgtacctttgggc
ataaccgcacagctggaggcatacatacttatgctttctacacaaaacatcatatctcct
gctcacggaaagcccatcaccatgccttctcaggacatgatcctgggcgtttattacata
acgcaagaggtaccaggtgcaaagggagaagctaagctcttcttcagcaaagaggaggtg
cttctggctttagaaaatcaaaaggtggatatgcacgccagaataaagcttagattagaa
gacggtaaacttatagaaacgactcctggaagggtgctttttaatagcatactgcccgaa
ggccatcccttcgtaaacgaacctcttgacaagaagaaagtttccaagctcatcacaaac
atatacaacaagtatggaactgaaagaaccgcaaagtttctggatgaccttaaagagctt
ggctttaacatggctacaaaagcggctatatccataagcgtggacgaccttcagataccc
aaagtaaagaaggacatactcaaagaatctttccagcaggcggacgagatcatagaccag
tacatgaaagggctactgaccaacaaggaaaggtacaacagaatcatagacctctggtcg
gagataacagatagagtttcaaaagccatgtttgaagagatagaaaagagccagaggaag
gaaggagaaaaggtctatccgggcattttcaaccccatatacatgatggcaaactctgga
gcaagaggaaacagagaccagataagacagctcgccgccatgagggggctcatggcaaag
cacacgggtgagttcatagaaacccccattatatccaattttagagaggggctttcggta
cttgagtactttatctccacctacggtgcgagaaagggtcttgcggacacagctctaaaa
acagcttttgccggttacctcaccaggagattggtggatgtggcgcaggatattatgatt
actgaacatgactgcaaaacccatagaggcatagatatgacagctatagtggaaggtgga
gaggaaaaggtacctcttaaagacaggataataggtagaaccttagcggaggatattgta
gacccctacacgggtgaggtaatagccaagaggaaccagatagtggacgagggtttagca
gacaggatagcgcatgcaggcatagagaaggtaaaagtgaggtcccctcttacatgcgaa
gccaaattcggcgtatgtgccatgtgttacgggtgggacctttctcaaaggaagctggtg
gatgtgggtgaagctgtgggtataatagcagctcaatccataggtgagcccggcacacag
ctcaccatgaggaccttccacataggaggcgctgcagtcgcggaaagagttcagaatgtt
ctgacatgcgaaaccagcggcagaataaagtattacaatatgaagctcataaagaacaag
gaaggcaagctcataaacatctcaaaagatgcagcaatagcagtgcttgataaagactca
agacctgtggaaagacattcggtaccctacgcagctaccattcatgtagaggaaggtcag
gaggtaaaagaaggtacaattctcgcagaatgggatcccttcaatacatacataatagcg
gaggaaggtggaaaggtagagttcaaagacatagtgctggatgtgacggtgaaagaagaa
agagaccctctttcgggaaaaacatccacagtagtgtcttttacaagaccaaaagatgcc
atgctccacactccaaggttagtagtggctaccccagatggtagagaactcacctatgac
ctacccgtcaattctatactgaacataccacctgaacacatacagctcgagtggagcata
tgtcctacatgtagcgaatctgaaggcactgagatacagcacaagtattatgtggtaaag
ggctatcaggtgagcccgggagatgtgcttgcaagaatacccaaggagatggcaaaggtt
agggacatagtaggcggtttgcccagagttgaagagctgtttgaggcaaggaagcccaaa
aatcctgccatactcactgagatagatggcacagtgagaatttatgaggatgcggatgag
gtgatactttacaatcccaaaactggtgaaacaagaaagtacgacataaagaaggacgag
tacattctggtaagccacggtcaatatgtacagaagggaagtaacataaccgagagtgtg
aaagctgaaatagatgggcaagtaaggataaagggaagagggtataagattgtagtttat
aacaaagacaccggacttcagagagagtactttgtaccaaagggcaaacaccttctggtc
aaaaacggtgatacagtaagcgctggagacccactgacggacggaacacctgtacccgaa
gagatcctcaggataaagggcatagacgaacttcaaaagttcctactcaaagaggtgcaa
atggtttacagactgcaaggtgttgacataaacgacaaacactttgagatcatcataaaa
cagatgcttagaaagaggagggtagtagaccctggagacagcaggttcttggtgaatgag
gaggtggacatggaagaccttgagcaggaagttgagaggataaaagaagaaggaggcaag
ctacctaaggtagaacctatcttggttggcatatctaaggctgcgcttaccgcgagaagc
tggatatccgcagcatccttccaagagacgcctaaggtactaacggatgcttcgtgcgag
ggcaaagtagatgacttgagaggaataaaggagaatgtaattataggaaacctcatacct
gctggaactggtgcaggaaagtacgctgtggtcaaagttattgaggagacaaaggcaaaa
gctctaaaggatgtgttataa
DBGET
integrated database retrieval system
