Hydrogenobacter thermophilus: HTH_1018
Help
Entry
HTH_1018 CDS
T01167
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hth
Hydrogenobacter thermophilus
Brite
KEGG Orthology (KO) [BR:
hth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hth03016
]
HTH_1018
Enzymes [BR:
hth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HTH_1018
Transfer RNA biogenesis [BR:
hth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HTH_1018
Prokaryotic type
tRNA splicing ligases
HTH_1018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAI69476
UniProt:
D3DI24
LinkDB
All DBs
Position
complement(930513..931955)
Genome browser
AA seq
480 aa
AA seq
DB search
MGLKDNLLRLSDYVYVLSENTVKGQRVPVYFYLSDKLFEHLEEDAIRQAANAATLPGVEK
AIYVMPDVHVGYGFPVGGVMGVNTDEGVISPGSIGYDINCGVRLIATHLSEERIKPIRQE
LMKEILSKVPAGVGSTGRLKLSKEQLKEVAIKGARWAVEHGFGLEEDLLHIESSGTLANA
DPDKVSNFAYERGSEELGTVGSGNHFVEVQTVDEIYDEQIAKRLGLGKGQITIMVHSGSR
GFGHQVCVDYLKVAKDALEKYRIEIPDMQLACMPFKSKEGQDYFKAMNAAANYAFANRQI
LGFITADVIRRFLGISWEELGYRVIYDLAHNIGKIEKYTIDGKDKELLIHRKGATRAFPP
YNPDVPPAYRDIGQPVLIPGDVGRYSFLLVGTHKSMEISFGSACHGAGRLMSRTKAKEYV
KREGIEKVLEGLVVVARGKGTVMEEVPQAYKDVTEVVRVVHELGIAKLVARFKPLGTLKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgaaagataacctccttcgcctttctgattatgtttatgttctgagcgaaaac
actgtaaagggtcaacgcgtccccgtttacttttacttgagtgataaactctttgaacat
cttgaagaggatgccataagacaggctgctaatgcggcaaccctcccaggtgttgaaaaa
gctatatatgttatgccagatgttcatgtaggttatggctttcctgtaggtggtgttatg
ggagtcaacacggatgaaggtgttataagtccgggatccataggctacgatattaattgt
ggcgtaaggctcatagctactcatctttctgaggagaggataaaacctatcagacaggag
cttatgaaagagatactaagtaaagtgccggcaggggttggttcaacaggaaggctgaag
ctatcaaaagaacaactcaaagaggttgccataaaaggtgcaagatgggctgtcgagcac
ggctttggtcttgaagaagaccttctgcacatagagagctctggcacgcttgctaatgcg
gatcctgataaggtttcaaactttgcttacgagagaggttctgaggagcttggtactgtt
ggctctggaaatcactttgttgaggtgcaaactgttgacgagatatacgatgagcagata
gctaaaaggctaggacttggcaagggacagataaccattatggtacactcaggttcaagg
gggtttggacatcaggtatgcgttgattatctcaaggttgccaaggatgctcttgagaaa
tatcgcatagaaataccggatatgcagctcgcctgcatgcccttcaagtcaaaagaggga
caggactactttaaagctatgaatgcggcggcaaattatgcttttgccaacagacagata
ctgggctttatcaccgcagatgtcataagaagatttttaggtatatcttgggaagagctc
ggttaccgagtcatatatgaccttgctcacaacataggaaagatagaaaagtacaccatt
gatggtaaagataaggaacttttgatccatagaaaaggcgcaacaagagcctttccacca
tacaatccagatgtgcccccagcatacagagacataggtcagcccgttttaattcccggt
gatgtagggagatattccttccttctggtaggtacgcacaagagcatggaaataagcttt
ggaagcgcttgtcacggagctggacggctcatgtctcgtacgaaagccaaagagtatgtg
aagagggagggtatagagaaggtacttgaaggtcttgtggtggtagccagagggaaaggt
acagtaatggaagaagtgccccaagcatacaaagatgtaacagaagttgtgagagttgtg
catgagcttggtatagctaagcttgtggcgaggttcaaaccactggggactttgaaaggt
tga
DBGET
integrated database retrieval system
