Hydrogenobacter thermophilus: HTH_1428
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Entry
HTH_1428 CDS
T01167
Symbol
cafA
Name
(GenBank) ribonuclease G and E
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
hth
Hydrogenobacter thermophilus
Brite
KEGG Orthology (KO) [BR:
hth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hth03019
]
HTH_1428 (cafA)
03009 Ribosome biogenesis [BR:
hth03009
]
HTH_1428 (cafA)
Messenger RNA biogenesis [BR:
hth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HTH_1428 (cafA)
Ribosome biogenesis [BR:
hth03009
]
Prokaryotic type
rRNA processing factors
HTH_1428 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Propep_M14
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
BAI69879
UniProt:
D3DJ77
LinkDB
All DBs
Position
1304105..1305505
Genome browser
AA seq
466 aa
AA seq
DB search
MAKNLIVLSDQERFFSLLIDDGEVSKIKVERRGATRLVDSIFKGKVKKLVKGMDGVFVDI
GLEKEAYLPIKQNCKKNGEEIKPVRVGEEVLVQVVREPVGEKGAKLTSRIRLVGKYLIYL
PNANDVKFSSRLEEEDRERLKAIAIEVLPRYGFSCGVIFRRHASKASEEEIIKDIDSLKR
LWLKILKKFSAQKKPGLLLEEYPNYIKMIKDHWYELGEMVVDNPYVWNDIVSFLEEFEPS
LVKKVVYVKDVSAYINRYRIHDTFRKMLSKYVWLRGGGYIVIEETEAMTVIDVNSGEPYG
ESHEENALNTNLEAAKEIAKHIMLRDIGGIIVIDFIDMKRQENRDLVIRTLQESFGEEAC
NVQIYGFTRLGLLEMARKKSGESVSSLLTESCPLCKGRGKVRGKSLLAFELEKDLRRESH
GVIDLHVNPQSADTVRSVIEKNGFKYVNMVEDANVEYNDYEIHYRT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaacttgatagtgctctcagaccaggagaggtttttctctctactgatagac
gatggagaagtttctaagatcaaggtagaaaggcgaggtgccaccagattagtggacagc
atctttaaaggtaaggtcaaaaagctggtgaaaggtatggacggtgtgttcgttgatata
ggacttgaaaaagaagcctatctgcccatcaaacaaaactgtaaaaaaaatggagaggaa
ataaaacccgtaagggtaggggaggaagtgctggtgcaggtggtgagagaacccgtagga
gaaaagggagcaaaattaacaagcagaataaggttagtgggtaaataccttatatacttg
cctaatgctaacgatgtgaagttctcttcacggcttgaagaggaagacagagaaaggctc
aaagccatagccattgaagtacttcccagatacggatttagttgcggagtaatattcaga
agacacgcatcaaaggcaagtgaagaggaaataataaaagacattgatagcttaaaaagg
ttgtggcttaagattctcaagaagttctcagctcagaaaaagccgggattactccttgaa
gagtatcctaattatataaagatgataaaagatcactggtatgaacttggggagatggtg
gtagataacccttatgtgtggaacgatatagtatccttccttgaggagtttgaaccatct
ttggtaaaaaaggtggtgtatgttaaggatgttagtgcgtacataaacaggtatagaata
cacgatactttcaggaaaatgctcagtaagtatgtgtggctcagaggtggaggatacata
gtcatagaagagacagaagctatgacggtcattgatgtaaacagcggggagccttacgga
gagtctcacgaagagaatgcattaaacaccaacttggaagcagcaaaagagattgccaaa
catataatgctcagagatataggtggtataattgttatagactttattgatatgaaaagg
caagaaaacagggacctggtgatcagaacattgcaagagtcttttggagaggaggcgtgc
aatgtgcagatttacggttttacaaggctcggacttttagaaatggcaaggaaaaagagt
ggtgagagtgtatcttctttgcttaccgaaagctgtccgctgtgtaaagggagaggaaag
gtgcgtggcaagagccttttagcttttgagcttgaaaaggacttaaggagagaatctcat
ggcgttattgacctgcatgtaaatccccagagcgcggataccgtcagaagcgtcatagag
aaaaacggatttaagtatgtgaacatggttgaggacgcaaatgtggaatacaacgactat
gagatacactacaggacctaa
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