Halorhabdus tiamatea: HTIA_1388
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Entry
HTIA_1388 CDS
T02781
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hti
Halorhabdus tiamatea
Brite
KEGG Orthology (KO) [BR:
hti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hti03016
]
HTIA_1388
Enzymes [BR:
hti01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
HTIA_1388
Transfer RNA biogenesis [BR:
hti03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
HTIA_1388
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
CCQ33516
UniProt:
F7PK06
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All DBs
Position
complement(1369669..1370715)
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AA seq
348 aa
AA seq
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MELVLEGDVVRGDSEARERFYDSRGYGHVDAGGLVLAPVEAAHLLYRGDVDHVRDATSGE
GLDFRALLSSAAVSEIAVLVYKDLRDRGFYLSPAREGWVDDPAGADFVVYPRGQGPWDEA
VAYRVRAISERTAVSAATLGDSVLAVVDEESAITYLETSHPDIGGSTTTDLPTGVAADLL
GDRVLVWEPPATLYREGFYGQPLDDETAEPLQLSLIEAAALAGQGVLDVEGGADAIVECG
REVEGERFDRRLSVYRALRGRGVVPKTGYKFGADFRTYADVESVDSLGHSELLVRVLPAD
HAFSPRDLALDVRLAHGVRKRMVFALVAEAEADGEPRIEWLEVARLTP
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtcctggagggagacgtggtccgcggcgacagcgaggcccgcgagcgtttc
tacgactcacgggggtacggccacgtcgacgccggcgggctggtgttggcacccgtcgag
gctgcccacctcctctaccgtggtgacgtcgatcacgtccgggacgcgacaagcggcgag
ggactcgacttccgggcgctcctctcttctgccgctgtctcggagatcgccgtcttagtc
tacaaggacctccgggatcgggggttctacctttcgcccgcccgcgagggctgggtcgac
gaccccgcaggcgcggatttcgtggtctacccccgcgggcaggggccctgggacgaggcg
gtcgcctaccgcgtccgagccatcagtgaacgaacggctgtctccgcggccacgctgggg
gacagcgtcctggcggtcgtcgacgaggagtcggcgatcacctacctcgaaaccagccat
cccgacatcggtgggtcgacgacgactgacctgccgaccggcgtcgcggccgacctgctg
ggcgatcgagtcctggtctgggagccgcctgccaccctgtatcgcgagggcttctacggg
cagccgctcgacgacgagacggccgagcccctccagctttcgctgatcgaagctgccgca
ctggctgggcaaggagtcctcgatgtcgagggtggtgcggacgcgatcgtcgagtgcggc
cgcgaggtcgagggcgagcgcttcgatcgccgcctttcggtctatcgggctctccgcggg
cgtggcgtcgtgcccaagacgggctacaagttcggcgcggatttccgtacctacgccgac
gtcgagagcgtcgactcgctggggcactccgagttgctcgttcgggtgttgccagccgac
cacgcgttctcgccgcgggacctcgccttggacgtgcgactggcccacggcgtccggaaa
cggatggtgttcgcgctggtggccgaggctgaggccgacggcgagccccgaatcgagtgg
ctcgaagtcgctcgattgacgccgtga
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