Halorhabdus tiamatea: HTIA_2505
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Entry
HTIA_2505 CDS
T02781
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hti
Halorhabdus tiamatea
Brite
KEGG Orthology (KO) [BR:
hti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hti03016
]
HTIA_2505
Enzymes [BR:
hti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HTIA_2505
Transfer RNA biogenesis [BR:
hti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HTIA_2505
Prokaryotic type
tRNA splicing ligases
HTIA_2505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
VESA1_N
Motif
Other DBs
NCBI-ProteinID:
CCQ34612
UniProt:
F7PND9
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All DBs
Position
2507674..2509134
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AA seq
486 aa
AA seq
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MTTYDAGEFTLQKVREYVWEIPQEDEMRVPARVLASEELLDEISEDLSLQQLKNTTHLPG
IQKYALAMPDAHQGYGFPVGGVAGIDTENGVISPGAVGYDINCGVRMMKTNLTYSDIQGR
EQELVDALFEAIPSGLGGGGVVQTDVDTLAEILERGVEWALEEGYAVEDDLTHCEDEGVR
PGADADAVSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAERFGLEEDQIVVLIHC
GSRGLGHQVCTDYLREIEKTHEGLLEQLPDKELAAAPAGSHLAEEYYAAMNAAINFAWVN
RQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIGDEDRELFVHRKGATRA
FPAGHPEVPAAYRDVGQPIIIPGSMGAGSYVLRGGENSLAETFGSTAHGAGRLMSRTEAK
NTYWGEDVQDDLRETQEIYVKAQSGATVAEEAPGVYKDIDEVVRISDELGIGDRVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactacctacgacgccggcgagttcaccttacagaaggttcgggagtacgtctgggaa
atccctcaggaagacgagatgcgcgtcccggcccgcgtcctcgccagcgaggaactcctc
gacgaaatcagcgaggatctctccttgcagcaactcaagaacacgacccacctcccgggg
atccagaagtacgccctcgcgatgcccgacgcccaccagggctatgggttcccggtcggc
ggcgtcgccgggatcgacaccgagaacggcgtcatctcgcccggtgcggttggttacgac
attaattgtggggtgaggatgatgaaaacaaacctcacgtacagtgatatccaggggcgc
gagcaagaactcgtcgacgcgctgttcgaggcgatcccgagcgggctcggcggcggtggc
gtcgtccagacggacgtcgacaccttagcggagattttagagcgtggtgtcgagtgggca
ctcgaggagggatacgccgtcgaagacgatctcacccactgcgaggacgagggtgtccgg
ccgggggccgacgccgacgcggtctcgaagaaggccaaagacaggggtcgccagcaactc
gggagtctcgggagcgggaatcacttcctggaagtccagcgtgtcacggacgtctaccgc
gaggacgtcgccgagcgcttcggtctcgaggaagaccagatcgtggttctgattcactgt
ggctcgcgcgggctgggccaccaggtctgtaccgactaccttcgggagatcgaaaagact
catgagggactgctcgagcaactcccggacaaggaactcgcggccgcgcccgcaggcagt
cacctcgccgaggagtactacgccgcgatgaacgcggcgatcaacttcgcgtgggtcaac
cgccagctcatcatgcaccgaacccgcgaggtcttcgccgacgtcttcgatcgtgactgg
cgcgacatggagatggagttgctctacgacgtcgcccacaacatcgccaagaaggagacc
cataccattggggacgaggatcgcgaactcttcgtccaccggaagggcgcgacgcgggcg
ttcccggccggccaccccgaagtcccggcggcctaccgcgacgtcggccagccgatcatc
atccccgggagcatgggcgcggggagttacgtcctccgcggtggcgagaactccttggcg
gagacgttcggctcgacggcccacggcgcgggccggctcatgtcccggacggaagccaag
aacacctactggggcgaggacgtccaggacgacctccgggagactcaggaaatctacgtc
aaagctcagagcggcgcgactgtcgccgaggaggcccccggcgtctacaaggacatcgac
gaggtcgttcggatctcggacgaactcgggatcggcgaccgggtcgcccggacgttcccg
gtctgcaatatcaaaggctag
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