Hydrogenophilus thermoluteolus: HPTL_0340
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Entry
HPTL_0340 CDS
T05630
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
htl
Hydrogenophilus thermoluteolus
Pathway
htl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPTL_0340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htl03019
]
HPTL_0340
03009 Ribosome biogenesis [BR:
htl03009
]
HPTL_0340
Enzymes [BR:
htl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HPTL_0340
Messenger RNA biogenesis [BR:
htl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPTL_0340
Ribosome biogenesis [BR:
htl03009
]
Prokaryotic type
rRNA processing factors
HPTL_0340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Pput2613-deam
Motif
Other DBs
NCBI-ProteinID:
BBD76608
UniProt:
A0A2Z6DW85
LinkDB
All DBs
Position
complement(380104..383328)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDIDIESAHREQRKGNIYKAVITRIEPSLEAVFVDY
GEERHGFLPFKEVARSYWRSTEQNGRTRVQDALEVGQELIVQVEKEERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRIDGEERAELKQMLELLNVPEGMSLIARTAAIGHSLEELQ
WDLDYLLKLWRAIEEAANAQKAPFLIYQESALVIRAIRDYFQPDISEILCDTDEIYEQAR
QFMQHVMPDCVRRVKRYADDVPLFSRFQIEHQIETAYARQVTLPSGGAIVIDHTEALVAI
DVNSGKATKGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMENPKNQREVEQK
LKEALHFDRARVQMGRISKFGLLELSRQRLRPALAEGTYVPCPRCSGTGHIRSTESAALH
ILRIIEEEAIKEHTAAVYVQVPVDVGTFLLNEKRFDVARIEARHQVRVVIIPNRHMETPA
HEVVRLRHDQIDNLDVRLVSYELVTPPAPETAPTNLLSERKAPKQEAAVKGIAPDAPPPV
TRATDAPEDATADTAPTAQTTEAPQQAPLLQRLFAWLKSLMGPGDTSATSSETETASPSA
PPVRNGNGRRNGNRRRPPRRKRSDESPRDALTSETRTPQPQTLSALAESADSSLASSAES
ETSAEPLELVLTPESGSESPAKRRRRRSRGRRKESAAESETTAPTETYDAATTETTSAVA
DTTEELPAEEPTPTAPSAASAQPAETAREAAKGAETAQPEATEPAVTASTDAAEEIATPA
PEHAEKERVPDDGILPERQLPVPVTPAVTEVGAVSAAGETTDTPTAADETALDTTQRPEA
EPGATAAVVPQDGETAEQTPADEKPGAESQPAAPEATAPEAAEPQSGASPANAEGSEEVP
VLLAPLPVPERLDGSLAAIPPGRPAVSQNLSEGDPRDGNTATEAALGTPASTTDLPAGAV
EDAPHETPPTMSEPGVPPANAAPSATAAPSSRNAETPKGNESHEVTDEPAPRRETDTAAL
REMVAQAGLVWIETDPSRVTYRPVFPQPEGLGRVIPRAPKRDEGPLIQVETRRN
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctcttcaatgccacgcaagccgaagaattgcgcgtggcgatcgtagat
ggccagaaactgatcgatatcgacatcgaatccgcccaccgcgaacaacgtaagggcaac
atctataaagcggtcatcacccgcatcgaacccagtctggaagcggtcttcgtcgactac
ggcgaagagcggcatggtttccttcccttcaaggaggttgcgcgcagctactggcggagc
accgaacagaacggtcgcacccgtgtccaagacgcgctcgaagtcggtcaagagctgatc
gttcaagtcgaaaaagaggagcgcggcaacaaaggcgcggcactcaccacgtatgtttcg
ctcgcagggcgttatctggtcctgatgcccaacaacccgcgcggcggcggcgtttctcgc
cgcatcgacggtgaagagcgcgccgaactcaaacagatgctggagctgctcaacgtcccg
gagggcatgagcctgatcgcacgcaccgcagcgatcggccattcgctcgaagagctccaa
tgggacctcgactacctgttgaaactctggcgcgcgatcgaagaagcggcaaacgcccaa
aaagcccctttcctcatctatcaagagagcgcgctcgtcatccgcgcgatccgcgactac
ttccagcccgacatcagcgaaatcctctgcgacaccgacgaaatttacgagcaggcgcgc
cagttcatgcagcacgtgatgcccgactgtgtgcgccgtgtcaaacggtacgccgatgat
gtcccgcttttttcccgctttcagatcgaacatcagatcgaaaccgcgtacgcgcgccaa
gtaaccctgccctctggcggtgcgatcgtgatcgaccacaccgaagcgcttgtcgcgatc
gacgtcaactccggcaaagcgaccaaaggtgccgacatcgaagagaccgcgctcaagacc
aacctcgaagccgcggaagagatcgcgcgacagctgcggctacgcgacctaggcggcctg
atcgtgatcgacttcatcgacatggaaaacccgaaaaaccagcgggaagtcgaacagaaa
ctcaaagaggcgctgcacttcgaccgggcacgggtccagatggggcgcatcagcaaattt
gggctcctcgagctctcacggcaacggctccgcccggcgctcgccgaaggcacctatgtc
ccctgcccgcgctgcagtggcaccggtcatatccgcagcaccgaatcggccgcgctgcat
atcctgcgcatcatcgaagaagaagcgatcaaagagcataccgccgcggtttatgttcaa
gttccggtcgacgtcggcacctttttgctcaacgaaaaacggttcgacgtcgcccgtatc
gaggcgcgccaccaggtccgcgtcgtgatcatccccaaccggcacatggaaacgccagcg
cacgaagtggtgcggctgcgccacgaccagatcgacaacctggacgtgcgcttggtgagc
tacgaactggtcacgccgccagcgccggaaaccgcgccgacgaacctcctgtccgagcgc
aaagcgcccaagcaagaagccgcggtgaaagggatcgcccccgacgccccgcccccggtc
acgcgagcaacggacgcaccggaagacgcgacggcagacacggcgccgacggcccaaacc
accgaggcaccccagcaagctccgctgcttcagcgccttttcgcgtggctcaaaagcttg
atgggaccgggcgacaccagcgctacctcatcggaaaccgaaaccgcgagcccgtccgcg
ccaccggtgcgaaatggcaacggtcgccgcaacggcaacagacgtcgcccaccgcgccgc
aaacggagcgacgaatcgccgcgcgacgcgttgaccagcgaaacgagaaccccacagccg
caaaccttaagcgccttggccgaatctgccgactcctccctcgcgtcatcggctgaatcg
gaaacgagcgccgaaccgttggaactcgtactcacgccggagagcggcagcgaatcgccg
gccaaacggcgtcgccgccgcagccgggggcggcgcaaagagtcggctgccgaaagcgag
accactgctccgaccgaaacctacgacgcagcaaccaccgaaaccacttcggcggtagcg
gacacaaccgaggagcttccggctgaagaaccgaccccgaccgcaccgtcagcagcatcg
gcacaaccggccgaaaccgcgcgcgaagcagccaaaggggctgaaaccgcacaacccgag
gccaccgaacctgccgtgacggcatccaccgatgcggcagaagaaatagcaacaccagca
cccgagcacgccgagaaggagcgcgtacctgacgacggcatccttccagaacggcagctc
ccggtaccggttacgccagcagtcacggaagtaggggcagtaagcgctgctggcgaaacg
acagatactccaactgcagcggacgaaacggctcttgacaccacccaacgtccggaggca
gagcctggcgcaaccgcggcagtcgtgccgcaagacggcgaaacagccgagcagacaccc
gctgacgaaaagcccggtgccgaatcgcaaccggctgcaccagaagccacggcacccgaa
gcagccgaaccccaatccggtgcgtcgcctgcgaatgccgaaggctccgaagaagtgcca
gtactgcttgcgccgcttccagtcccggaacggctcgacggttcgctggccgccatcccc
ccggggcgtccagcggtttcgcaaaacctgagtgaaggcgacccgcgtgacggcaacacg
gcaacggaagccgctcttggcacccctgcgtcgacaacggacctaccagcgggcgcggta
gaggacgcgccccacgaaaccccgccgacaatgtccgaaccgggcgtgccgcccgccaac
gcggcgccttctgcaaccgctgcgccatcgtcccgcaacgcagagacgccgaagggcaac
gagtcgcacgaggttacggacgagcctgccccgcgccgcgaaaccgataccgcggcgctg
cgggaaatggtcgcgcaagcgggcctcgtctggatcgaaaccgaccccagccgcgtcact
tatcgaccggttttcccgcagcctgaaggcttggggcgcgtgatcccgcgcgccccaaag
cgcgacgaagggccgctcatccaggtggagacgcggcgcaactaa
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