Hydrogenophilus thermoluteolus: HPTL_0384
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Entry
HPTL_0384 CDS
T05630
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
htl
Hydrogenophilus thermoluteolus
Pathway
htl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPTL_0384 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htl03021
]
HPTL_0384 (rpoC)
03400 DNA repair and recombination proteins [BR:
htl03400
]
HPTL_0384 (rpoC)
Enzymes [BR:
htl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPTL_0384 (rpoC)
Transcription machinery [BR:
htl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPTL_0384 (rpoC)
DNA repair and recombination proteins [BR:
htl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPTL_0384 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BBD76652
UniProt:
A0A2Z6DW64
LinkDB
All DBs
Position
421331..425509
Genome browser
AA seq
1392 aa
AA seq
DB search
MNNLLANLFRQSVDNPTEFDAITIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKYRGVICEKCGVEVTVSRVRRERMGHIELAAPVSHIWFLK
SLPSRLGLVLDMTLRDIERVLYYEAYVVIDPGLTPLQRGQIMSEESYHQAFEEYAGDFHA
MMGAEGIRELLRTLDLKREIEKLRGELETTGSDAKIKKISKRLKVLEAFYRSGMKPEWMI
MDVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELKAPEIIVRNEKRM
LQEAVDSLFDNGRRGKAMTGPNKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIYHKLETLGYCTTIKQAKKMVENQEPVVWDILEEVIHE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQV
EARTLMMSSNNILSPANGDPIIVPSQDIVLGLYYATREAVGAKGEGMIFADVAEARRAWE
QGIASLHARVTVRITEYEFDENGEPTIAKTTRRETTVGRAILSEILPKGLPFELIDRPLK
KKAISQLINQSYRKCGLKATVIFADQLMNWGYKLSTRGGLSIAVKDMLIPPQKEAIIAQA
EEEVKEIAQQYASGLVTATERYNKVVDIWGRASDQVAKALMDQLSKERVTLPNGEVVEQE
SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVTQDLVITESDCGTSNGFYMKALIEGGEVIEALRD
RILGRVVAEDVVDPDTRETLIPAGTLLDEPLVELIDEKGVDEVKVRSPLTCETHYGVCAK
CYGRDLARGGLVNVGEAIGVIAAQSIGEPGTQLTMRTFHVGGAASRAVAQSGIEAKVGGT
IRFSPNMRFITRSDGEKIVTARAAEVQVVDESGRERERHKVPYGAILHVDEGQQVAAGVK
LASWDPHTRPIISEYGGTVRFDNVVEGVTVAKQVDEITGLSTLVVIDAKQRGASKVGRPS
VHLIGPDGDSVKIPGTETPFLITFPVGAIITVREGQEVAAGDVLARIPQESAKTRDITGG
LPRVAELFEAREPKDAGMLAEVTGTVSFGKETKGKHRLILTEPDGTTHEFLIPKEKHLLV
HDGQVVNRGELIVDGPVNPHDILRLQGIEALARYIIDEVQDVYRLQGVRINDKHIEVVVR
QMLRRVVITDPGDSRFLPEEQVERAEVLIENARLEKEGKVPAKYENLLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAHHRARRRRSRIEQA
EETWNAITSDAS
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatttactcgccaacctctttcggcaaagcgtcgacaaccccacggagttcgac
gcgatcacgatcggtcttgcgtcgccggagaagatccgcagctggtcttacggcgaagtg
aaaaaaccggagacgatcaactatcggacgttcaaaccggagcgcgatggtcttttttgt
gccaagatcttcggcccggtcaaagactacgagtgcctctgcggcaaatacaagcggctg
aaatatcggggcgtgatctgcgaaaagtgcggcgtcgaggtgaccgtctcccgtgttcgc
cgcgaacggatggggcacatcgagctcgcagcgccggtatcgcacatctggttcttgaag
agcttgccgagccggcttgggctcgtgctcgatatgacgctgcgcgacatcgagcgggtg
ctctactacgaagcctacgtcgtgatcgacccagggcttaccccgctccagcgcgggcag
atcatgtcggaagagagctaccaccaggcgttcgaagagtacgcgggggacttccacgcg
atgatgggggccgaagggatccgcgaactcctgcgcaccctcgacctcaagcgcgaaatc
gaaaaactgcggggcgaactcgaaaccaccgggtcggacgccaagatcaagaagatcagt
aagcgcctgaaagtgctcgaagccttctaccgctccggaatgaagccggagtggatgatc
atggacgtgatcccggtgctgccgcccgatctgcgtccgctcgtaccgctcgacggaggg
cgcttcgctacctccgacctcaacgacctctaccgtcgggtgatcaaccgcaacaaccgt
ttgcggcggctgcttgagctcaaagcgccggaaatcatcgtccgtaacgaaaaacggatg
ttgcaagaggcggtcgattcgctctttgacaacgggcgccgcggcaaggcgatgaccggt
cccaacaagcggccgctgaaatcgctcgctgacatgatcaaagggaaaggcggtcgattc
cgtcaaaatctccttggaaagcgggtcgactactcgggccgttcggtgatcgtggtgggg
ccgcaattgaagctccatcagtgcggattgccgaaactgatggcgctcgaactcttcaag
ccgttcatctaccacaaactcgaaacgctcggttactgcaccaccatcaagcaagcgaag
aagatggtggaaaaccaagagccggtggtgtgggacatcctcgaagaggtgatccacgaa
catccggtgcttctcaaccgcgcaccgacgttgcaccgcttggggatccaggcgttcgaa
ccggtcctgatcgaaggcaaagcgattcagctccacccgctcgtctgtaccgcgttcaac
gccgacttcgacggtgaccagatggcggtgcacgtgccgctttcgctcgaagcgcaggtc
gaagcgcgcacgttgatgatgagctcgaacaacatcctctcgcccgcgaacggggacccg
atcatcgtgccgtcgcaggacatcgtcttggggctctactacgctactcgcgaagcggtc
ggcgccaagggcgaagggatgatctttgccgacgtcgccgaagcacggcgcgcctgggag
cagggcattgcaagcctccatgctcgcgtcacggtgcgcatcaccgaatacgaattcgac
gaaaacggtgagccgaccatcgcgaagaccacacgacgggaaacgaccgtcgggcgggcg
atcctctcggagatcttgccgaaaggcttgccgttcgaactgatcgaccggccgctgaag
aaaaaagcgatctcgcagctcatcaaccagtcctaccgcaagtgtgggctcaaagccacc
gtgatcttcgccgaccagttgatgaactggggttacaagctctccacgcgcggcggactt
tcgattgcggtcaaagacatgctgatcccaccgcagaaagaggcgatcatcgcccaagcg
gaagaagaggtcaaagagatcgcgcaacagtacgcctccggtctcgtcaccgccaccgag
cgctacaacaaggtggtcgatatctggggacgggcatcggaccaagtggcgaaagcgctg
atggaccaattgtccaaagagcgcgtcacgctgcccaacggcgaagtggtcgagcaagag
tcgttcaactcgatctacatgatggcggactctggcgcacggggttcggcggcgcagatc
cgccagctcgccgggatgcgggggttgatggcgaagcccgatggctcgatcatcgagacg
ccgattaccaccaacttccgcgaagggctgaacgtcctgcagtacttcatttcgacccac
ggggcgcggaaagggcttgccgacaccgcgttgaagaccgcaaactcgggttacctgacc
cgccgtttggttgacgtcacacaagacctggtgatcaccgaaagcgactgcggcaccagt
aacggcttctatatgaaagcgctcatcgagggcggtgaggtgatcgaagcgctgcgtgat
cggatcctcggtcgcgtggtcgccgaagatgtcgtcgaccccgatacgcgggaaacactc
atcccggcgggaacgctgctcgatgaacccctggtcgaactcatcgacgagaaaggggtg
gacgaagtcaaggtgcgcagccccttgacctgtgaaacgcactatggcgtctgtgcgaag
tgctacggtcgcgacctggcgcgcggcggcctcgtgaacgtcggcgaggcgatcggggtg
atcgccgcgcagtcgatcggtgagccggggacgcagctcaccatgcggaccttccacgtt
gggggtgctgcatcgcgggcggtcgcgcagagcgggatcgaagcgaaggttggcggtacg
atccgcttttcccccaacatgcggttcatcacccggtcggacggcgagaagatcgtcacc
gcgcgggctgctgaggtccaagtggtcgacgagtcggggcgcgaacgcgaacggcacaaa
gttccctatggtgcgattctgcacgtcgacgaagggcagcaggtcgcagcgggggtcaaa
ttggccagctgggatccgcatacccgtccgatcatcagcgaatatggcggtaccgtgcgc
ttcgacaacgtcgtcgagggggtgaccgtcgcgaagcaggtcgacgaaatcaccgggctc
tccacgctcgtggtgatcgacgcgaagcagcgcggcgcgtcgaaggtggggcgtccgtcg
gtccatctgatcggtccagacggcgactcggtgaagattcccgggaccgaaacgccgttc
ctcatcaccttcccggttggcgcaatcattactgtgcgcgaagggcaagaggtggcagca
ggcgacgtcctggcacggataccgcaagaatcggcgaagacccgcgacatcacggggggg
ctgcctcgggttgccgagctcttcgaagcgcgcgaacccaaagatgccgggatgctcgca
gaggtcaccggcacggtttcgttcggtaaagagaccaaaggcaaacaccgcttgatcctg
accgaacccgacgggacgacgcacgaattcctgatcccgaaagagaagcacctcttggtg
cacgacgggcaggtcgtgaaccgcggcgaactgatcgttgatgggccggtgaacccacac
gatatcctgcgcttgcaggggatcgaagcgctcgcgcgctacatcatcgacgaagtgcag
gacgtctatcgcctccagggggttcggatcaacgacaagcacatcgaagtggtcgtgcgg
cagatgctgcgtcgcgtggtgattaccgaccccggtgactcgcgtttccttcccgaggag
caggtcgagcgtgccgaggtgttgatcgagaatgcgcgcctcgagaaagaggggaaagtc
ccggcgaaatacgagaacctgctgcttgggatcaccaaggcgtcgctctccaccgactcc
ttcatctccgcggcatcgttccaggagaccacccgggtgctcaccgaagcggcgatcatg
ggcaagcgcgacgagttgcgtggcctcaaagagaacgtgatcgttggccgcctcatcccg
gcggggacggggttggcgcatcaccgcgcgcgacggcgccgcagtcgcatcgagcaagcg
gaagagacttggaatgcaatcacctccgatgcgtcgtaa
DBGET
integrated database retrieval system
