Hydrogenophilus thermoluteolus: HPTL_1389
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Entry
HPTL_1389 CDS
T05630
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
htl
Hydrogenophilus thermoluteolus
Pathway
htl03410
Base excision repair
htl03430
Mismatch repair
htl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
htl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPTL_1389
03430 Mismatch repair
HPTL_1389
03440 Homologous recombination
HPTL_1389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htl03400
]
HPTL_1389
DNA repair and recombination proteins [BR:
htl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPTL_1389
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPTL_1389
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPTL_1389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF561
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BBD77653
UniProt:
A0A2Z6DYV1
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All DBs
Position
1471810..1473540
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AA seq
576 aa
AA seq
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MTPHRFQIRTAPARVVHRLQQAGADPLIARLYAARGVSDPSELSTALTALPPPEALKGID
AAATLLAEAIEAGAMLVVVGDYDCDGATATALAVRALRAMGARVDYLIPNRFTDGYGLTP
RIVEIAAQRFAPDLLITVDNGIASHEGVAAAAQRGIDVVITDHHLPGASLPAASAIVNPN
QPGCPFPSKTIAGVGVILYVMMALRSALRARGWFGAHRPEPNLAQWLDLVALGTVADVVP
LEHTNRILVAQGLARIRAGRICPGIAALFHAARRDPRTATTQDLGFFIAPRVNAAGRLQE
MTVGVECLITDDPIRAQQLAATLDQINRTRQSIEAKMKDEALALLDGEPLHEKQTLTLFH
PEWHQGVIGIVAGRIKERYHKPVFAFAPHEDGLVKGSGRSVPGLHLRDALDWISKREPQL
LITFGGHAMAAGVTLRAIDLDRFANAFEAAAATLAPEGLDPRTVTTDGSLACDALTLETA
EQLAAGVWGHGFPAPLFFDSFELLEQRLVGDAHLQLRLRRTDGTAAPLSAILFRHRDTLP
PRFTGAYQLNVDRWGGNQRLRLHIETVAPSDAPNLG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacaccccatcgcttccagatccgcaccgcccccgctcgcgtcgtccaccgcctgcaa
caagccggtgctgatccgctcatcgcgcggctctatgcagcgcgtggcgtttccgacccg
agcgaactcagcaccgcgctcaccgcgctccccccacccgaagcgctcaaagggattgac
gccgcggcgacgcttcttgccgaggcgatcgaagcgggcgcgatgcttgtcgtggtcggc
gactacgactgcgacggagcgaccgcaacagcgctcgcggttcgcgcgctcagggcgatg
ggcgcacgggtcgactacctgatcccgaaccgtttcaccgatggctatggcctcacgccg
cgcatcgtcgaaatcgcggcgcaacgtttcgcgcctgacctcctcatcaccgtcgacaac
ggcattgccagccacgaaggggttgcggctgctgcgcaacgcggcatcgacgtcgtgatc
accgaccaccacctccctggcgcgtcgctccctgcagcgagcgcgatcgtcaaccccaac
caacccggctgtcctttccccagcaaaaccatcgctggggtaggggtgatcctctacgtg
atgatggcactgcgcagcgcgctgcgcgcgcgcggctggttcggcgcccaccgtcccgaa
cccaatctcgcccagtggctcgatctggtggcgctgggtaccgtagccgacgtcgttccg
ctcgaacataccaaccgcatcctggtcgcgcagggactggcacggattcgcgccggacgg
atttgccccggaatcgcggcgctctttcacgccgcgcgacgcgacccccggacggcaacg
acgcaagaccttggctttttcatcgcgccgcgggtcaatgccgctgggcgcttgcaagag
atgaccgtcggcgtcgaatgcctcatcaccgacgaccccattcgggcacagcaattggcc
gcgacgctcgaccagatcaaccggacgcggcagagcatcgaagcgaaaatgaaagacgag
gcgttggcgctcctcgacggcgaaccgctgcacgaaaagcagacgttgacgctctttcac
cccgaatggcaccaaggggtgatcggcatcgtcgccggccgcatcaaggagcgttaccac
aaaccggtgttcgcgttcgcgccgcacgaagacgggctggtgaaagggtcagggcgcagt
gtccctgggctgcacctccgcgacgcgctcgactggatcagcaagcgcgaaccccaattg
ctcatcacctttggcggccacgcaatggccgctggggtgacgttgcgcgccattgacctc
gatcgcttcgccaatgcgttcgaggccgccgcagccacgttggcgccggaagggctcgac
ccgcgcacggtgaccaccgatggctccttggcgtgtgacgcgctgacgctggagactgcg
gaacagttggctgctggcgtctggggacatggctttcccgccccgctcttcttcgattcg
ttcgaattgctcgagcaacggctggtcggcgatgcccaccttcaactccgccttcgacgc
accgacggcaccgcagcgcccctttcggcgatcctttttcgccaccgtgatacgctacca
ccgcgctttaccggagcgtatcaactcaacgtcgaccgttggggcggaaaccaacgtctg
cggctgcacatcgaaaccgttgcaccgtccgatgcgccgaatctgggataa
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