Hydrogenimonas thermophila: RZR91_03120
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Entry
RZR91_03120 CDS
T09456
Name
(GenBank) AAA family ATPase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
htm
Hydrogenimonas thermophila
Pathway
htm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZR91_03120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htm03019
]
RZR91_03120
03400 DNA repair and recombination proteins [BR:
htm03400
]
RZR91_03120
Enzymes [BR:
htm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RZR91_03120
Messenger RNA biogenesis [BR:
htm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZR91_03120
DNA repair and recombination proteins [BR:
htm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RZR91_03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_22
DEAD
Helicase_C
AAA_12
AAA_11
AAA_30
wHTH-PRTase_assc
ResIII
PhoH
FtsK_SpoIIIE
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
WOE70568
LinkDB
All DBs
Position
618372..621497
Genome browser
AA seq
1041 aa
AA seq
DB search
MGVDKPNIETVIHYEVSDSLENYAQEAGRGARDKRLRAMCPLLFDESDLDKHFASLNRSK
VSASEINAVFRVLKKQKSKKVTMTALEIAKAANWDIEDSSKDYDTKVKTALLELEREGYL
ERSRNKVRYFADAVAKDSFESLYKKFEEDNIDEDKQKRLTLILSALIGRGKPRTVQIDEL
SYLLGFEREEVAAAILQLKEWQIINDSKDLSLYIKKSALKRYEVVKKIEFFLLDYIKRLQ
EGIVSMRSLNEALIQNEIIKQDDNKIELVKEILKLWRQVKNSFHFYRVSRQHDSWQITLE
DYEALKKSLQTKHAIAEKVITHFVSKVDTGRKDTKVHIEFSLLELQKELNLSASLKWLDK
ALLYLHIMQLVELAEGRFIYYAPMTIYKTDKFDKKLKYTKSEYAKRMKPHYDYKVEAIHI
MGEYAMRLQKSSEQAMAFLKDYFTSPYDAFKRKYKLLKRQLSQPMTRKRYEKIFNTLSDE
QKQIIEDKDSKTIMILAGPGSGKTKVLVHKIASLILKEDVKPDQFLMLTYSRTAVAEFKS
RLFELIGSMAYDVDIYTFHSYALQLIGRQVQENEEELLKQVVAIAGKKLQAKEITMPFKS
VLVLDEFQDINSDGFALVEAIWETHEGEIRMVAVGDDDQCILSSVNGADVTFFKKYRERF
GQDEDGYREYALTKNFRSDASIVSLANHMAQKLQTRIKTDVLVANSKEDGRVQLHLCQSS
NLEYLAVEQVKRVDITHSIAVLAHSNDEVSTLYSALYERGIEASYLLDRGSFRLKNLEEI
VYFDSHIKQLCGQNPSINEGYFFIALKRTMNHFKGSLHLKLLEKVVEGFRKEYETYYISL
WESYLDEIKFEDFSNSSRVTVSTMHKAKGKEFDTVIVVLHPRQIDDELIRLYYVAVTRAK
KELIILTDKKSLLSIMPKDITVIKDSNHYEQVNTKTFIMTLRDVFLGFCGWHNGRTEPLV
AGTKVQMRKRSGDKRFYLFVENNIVECLSKDFSKKIDEYIEAGYSVDDIEVESVVVWRDK
KENRHIKHALCKIVMKKDGQK
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgataagcccaatattgaaacagtcattcactatgaagtgtcagactctcta
gaaaactatgcgcaagaggcggggcgtggggcaagagacaagagattgcgtgcgatgtgt
cctctgctttttgatgagagtgatctagataagcactttgcatcactcaataggagcaaa
gtgagcgcaagtgaaatcaacgctgtttttagggtgttaaaaaagcaaaagtccaaaaag
gtcacaatgacagccttggagattgcaaaggctgcaaactgggatattgaagatagctca
aaagattatgatacaaaagttaaaacagctctactggagttggagcgtgaagggtattta
gagcgtagtcgcaacaaggtgcgctattttgccgatgcagtggcaaaagatagttttgag
agtttgtataaaaagtttgaagaagataacattgatgaggataaacaaaaacgtcttact
ctcatactcagtgcacttataggtcgtgggaaacctagaacagttcagatagatgaacta
tcttatcttcttggttttgaaagagaggaggtggctgctgcaattttacagttgaaagag
tggcagattatcaatgatagtaaagatttgagcttatatattaaaaagagtgccttgaag
cgttatgaagtagttaaaaagattgagtttttcttgcttgattatattaaaaggcttcaa
gaagggatcgtttcgatgcgctcactcaatgaagctctcattcaaaatgaaatcataaaa
caagacgataataaaatagagcttgtcaaagagattttaaaactatggagacaagttaaa
aacagctttcatttttatcgtgtcagtcggcagcatgacagctggcagattacgcttgaa
gattatgaagcattgaagaaatcattgcagacaaaacatgccattgctgagaaagttatt
acacattttgtctctaaagttgatactgggcgaaaagataccaaagtacacatagagttt
tcactacttgagttgcaaaaagagttgaacctttctgcgtctttaaagtggcttgataaa
gcactgttgtatcttcatattatgcagttggtagagctggcagaagggcggtttatctat
tatgctccaatgacaatctacaaaactgacaaatttgacaaaaagcttaaatatacaaag
agtgagtatgccaaacggatgaagccacactacgactataaagttgaagcgattcatatt
atgggtgaatacgctatgcggctgcaaaaaagctcagagcaggctatggcttttttaaaa
gactactttaccagtccatacgatgcatttaagagaaaatacaaactgctaaaaagacag
ctttcgcaaccgatgacacgcaaaaggtatgaaaagatttttaacacactctctgatgag
cagaagcaaataatcgaagataaagatagtaaaaccataatgattttggctggaccaggt
agcggaaaaacaaaagtactggttcataaaattgcttcattgattttaaaagaggatgtc
aagcctgatcaatttttgatgttaacctattctcgaacagcagtagcagagtttaagagc
cgtctttttgaactgattggttcaatggcgtatgatgtagatatctatacttttcacagt
tatgcactgcagctgataggacggcaggtgcaggagaatgaagaagaacttttaaagcaa
gttgtggctattgccggaaagaagttgcaagccaaagagattacaatgccgtttaagtca
gtcttggtacttgatgagtttcaagatattaattctgatggttttgcattggttgaagcg
atatgggaaacgcatgagggtgagatacgcatggttgctgttggtgatgacgatcagtgc
attttaagcagtgtaaatggtgctgatgtgacttttttcaaaaagtatcgtgagcgtttt
gggcaagatgaagatgggtatagagagtatgctttgacgaaaaactttagaagtgatgca
tctattgtttctcttgcaaaccatatggcgcaaaagttgcaaactcgtatcaaaactgat
gtgcttgttgctaactctaaagaggatgggcgtgtacaattgcatttatgtcaatcttca
aatttagagtatctggcagttgagcaggttaaaagggtcgatataactcactcaattgca
gtgcttgcacacagtaatgatgaggtttcaactctatattcagctctttatgagcggggt
attgaagctagttatctgcttgatagaggcagttttagactaaaaaatttggaagagata
gtatattttgactctcatattaaacaactttgcgggcaaaatccttctataaatgaaggc
tattttttcatagctttgaagagaacaatgaaccattttaaaggctctttgcatttaaaa
ctgcttgaaaaggtagttgaaggttttagaaaagagtatgagacctattacatctctctt
tgggagagttatcttgatgagatcaagtttgaagatttttcaaacagttcacgcgtgact
gtttctacaatgcataaggctaaaggaaaagagtttgatacagtaattgttgttcttcat
ccgcgtcaaatagatgatgagttgatccgactctattatgttgctgtaacaagagctaag
aaagagttgatcatattgactgataagaagagtttactttctataatgcctaaagatatt
acagttattaaagatagcaaccattatgaacaggtcaataccaaaactttcataatgact
ctcagagatgtctttttgggcttttgtggatggcataatggcagaactgaaccattagtt
gcaggaacaaaagtgcaaatgagaaagagaagtggagataaaagattttatctttttgta
gaaaacaatatagttgagtgtttgtcaaaagatttttctaaaaagatagatgagtatatt
gaagctggatatagtgttgatgatattgaggttgagagtgtagtggtttggagagataaa
aaagagaatagacatataaaacatgctctttgtaaaattgttatgaaaaaagatggtcaa
aaatag
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