Hydrogenophaga taeniospiralis: KI616_04390
Help
Entry
KI616_04390 CDS
T08018
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
htn
Hydrogenophaga taeniospiralis
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
htn03016
]
KI616_04390
Enzymes [BR:
htn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KI616_04390
Transfer RNA biogenesis [BR:
htn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KI616_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UCU95113
LinkDB
All DBs
Position
complement(856641..858725)
Genome browser
AA seq
694 aa
AA seq
DB search
MHILFDDAGKLMTGRLLSEAESSLQVELDSGKRVKVKSANALLRFDKPAPAQLMPAATAL
AETMELELAYEFAPEGEFGFAELAQEYFSASAGTEQQVAALLCLQGAPHYFRRAGKGRYK
KAPPEILAQALAGIEKKKQMQAQIEAWAAELASGQCPEPVRQQLYKILFKPDKNAPEYKA
VVEAARNSRTAPLTLLQNAGAIASAYQFHWQRFLFDQFPKGTGFPALQAPAIADELPLAA
VQAFSIDDSHTTEIDDALSLQGLGSGSVTLGIHIAAPGLAVLPDSPIDQVARNRLSTVYM
PGHKITMLPDEVVQAYTLMAGRDCPAVSLYVSFDEATLEPKDSRTVLERVPIAHNLRHDQ
LDTVITEDWLTGQAPASAAIAEAHLEALQPQLAFIFRLARHLKAQRELVRGKPENFNRPD
YTFRLEGVTGSEPAGDETVVIGTRQRGAPLDLMVAEAMILANSTWGNWLADCGVPGIYRS
QASLAPGVKVRMGTKAQPHAGIGVKSYAWSTSPLRRYVDMVNQWQIIACARHGKTAALAA
PFKPKDANLFAIISGFDAAYTAYNGFQNGMERYWTLKHLQQAGISELTATLFKDNLVRAD
SLPLVLPVMGAEGLPRGAHVRVRLGAIDHITLDVHGTVIERLDLPVDSVDDSSESEDGED
DELAAPLALAIDVDETQVDAPETAAETAVEAPGL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcacattctgttcgacgacgccggcaaactgatgaccggccgcctcctgtccgaagcc
gaaagttccctgcaggtggagctggattcgggcaagcgggtcaaagtcaagtccgccaac
gcgctgctgcgctttgacaaacccgcccccgcccagctgatgcccgcggccaccgcgctg
gccgagaccatggagctggagctggcctacgaattcgccccggaaggggagttcgggttt
gccgaactggcgcaggaatatttcagcgccagcgccggtacagaacagcaggtggcggcc
ctgctctgcctgcagggcgccccgcactacttccggcgcgccggcaagggccgctacaag
aaagcgccacccgagatcctggcgcaggcgctcgccggcatcgagaaaaagaaacagatg
caggcccagatcgaagcctgggcggccgagctggccagcgggcaatgccccgagccggtg
cgccagcagctctacaagatcctgttcaagccggacaagaacgcgcccgaatacaaggcc
gtggtggaagcggcgcgcaacagccgcaccgcgccgctcaccctgctgcaaaacgccggc
gccatcgccagcgcctaccagttccactggcagcgattcctgttcgaccagttccccaaa
ggcaccggcttcccagcgttgcaagcccccgccatcgccgacgagctgccgctggccgcc
gtgcaggctttttccattgacgattcgcacaccaccgaaatcgacgacgcgctctcgttg
caggggctgggcagtggctcggtcacgctgggcatccacattgcggcacccggtctcgcg
gtgctgcccgacagccccatcgaccaggtggcacgcaaccgcctgtccacggtctacatg
ccgggccataagatcaccatgctgcccgacgaggtggtgcaggcctacacgctgatggcc
gggcgcgactgccccgccgtctcgctctacgtcagctttgacgaggccacgctggagccc
aaggacagccgcaccgtgctggagcgggtaccgatcgcgcacaacctgcgccacgaccag
ctcgacaccgtgatcaccgaagactggctgaccggccaggcaccggccagcgccgcgatc
gccgaagcccatcttgaagcgcttcagccgcagctggccttcatcttccgcctggcgcgc
cacctgaaggcgcagcgtgagctggtgcgcggcaaaccggaaaacttcaaccggccggac
tacaccttccgcctcgaaggcgtgacgggcagcgagcccgcgggcgacgaaaccgtggtg
atcggcacgcgccagcgcggcgcgccgctcgacctgatggtggccgaggccatgatcctg
gccaacagcacctggggcaactggctcgccgactgcggcgtgcccggcatctaccgcagc
caggccagcctcgcgcccggggtgaaagtgcgcatgggcaccaaggcgcagccgcacgcg
ggcatcggcgtcaagagctacgcctggagcacctcgcccctgcgccgttacgtggacatg
gtcaaccagtggcagatcattgcctgcgcgcgccacggcaagaccgccgcgctcgccgcg
ccgttcaagcccaaagacgccaacctgttcgccatcatcagcggcttcgatgccgcctac
accgcctacaacggcttccagaacggcatggaacgttactggacgctcaaacacctgcag
caggccggcatctccgaactcaccgccacgctgttcaaggacaacctggtgcgagccgac
agcctgccgctggtgttgccggtcatgggcgccgaaggcctgccgcgcggcgcgcacgtg
cgggtgcggctgggcgccatcgatcacatcacgctggacgtgcacggcacggtcatcgag
cgactcgacctgccggtcgacagcgtggatgacagcagcgagtcggaggacggcgaagac
gacgaactggccgcaccgctggcgctggccattgacgtcgacgaaacgcaggtcgatgcc
ccggaaaccgccgccgaaacagcggtcgaggcgcccgggctgtga
DBGET
integrated database retrieval system
