Hydrogenophaga taeniospiralis: KI616_10485
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Entry
KI616_10485 CDS
T08018
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03030
DNA replication
htn03430
Mismatch repair
htn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI616_10485 (dnaE)
03430 Mismatch repair
KI616_10485 (dnaE)
03440 Homologous recombination
KI616_10485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htn03032
]
KI616_10485 (dnaE)
03400 DNA repair and recombination proteins [BR:
htn03400
]
KI616_10485 (dnaE)
Enzymes [BR:
htn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KI616_10485 (dnaE)
DNA replication proteins [BR:
htn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KI616_10485 (dnaE)
DNA repair and recombination proteins [BR:
htn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KI616_10485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UCU96230
LinkDB
All DBs
Position
2094011..2097577
Genome browser
AA seq
1188 aa
AA seq
DB search
MFIHLRLHTEFSVVDGTNRIDDVVAAAAADGQPALAITDLSNLFGAVKFYKAARGEGVKP
LLGAEVMLQGFTEETPNAMPGSHQPAAPRVILLVQDKQGYLNLSELLARAWTRSDGRGGA
LVQREWLEELNGGLLMLSGAQAGPVGQALIQGDANRAADVALKLAGLFTHRFYIELQRAG
RVDDERHVTAAVQLAARLHLPVVATHPVQFLEPDDYEAHEARVCISDGEILGNNRRVRRF
TREQYFKSAAQMEALFADIPSAVANTLEIAKRCSLTLVLGKPQLPNFPIPPVDGVIMSVE
DYFRHVSYEGLEGRLKHLFPDEAKREAVRARYVERLEFELNTILKMGFPGYFLIVSDFIK
WAKENGCPVGPGRGSGAGSLVAYALLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS
NRDRVIDYVKDRYGKDAVSQIATFGTMAARAAIRDVGRVLDFSYGFCDGISKLIPNKPGM
SVTLQYPPNPKPEGDKNNYAIEMEPVLAERIQKEDDVKTLIELAQKLEGMTRNIGMHAGG
VLIAPGKLTDFCPLYMQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK
RHKGQENFRFEDIPLDDQRVYALFSRGQTEAVFQFESRGMQGMLKDAKPSRLEDLIALNA
LYRPGPMDLIPSFVARKHGREVIEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLG
GADMLRRAMGKKKAEEMAEHRAIFRAGAAKNDISEAKADEVFDLMEKFAGYGFNKSHAAA
YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLWEDAKKMGISFEAPDVNRGFHRF
EPITDKSIRYGLGAIKGTGQQAIEAIVAAREGRGEGPNGAETGPFKSLFDFCRRVDRQRL
NKRTVEALIKAGAFDSLHLNRAEVLASVEVAFDFAAASVANANQGGLFDMMGEDDHGSST
QEPDLVSTTPWGVKEQLTLEKIALGFYFSGHLFDEVQREVRRFARTELGDVKESRDPVIL
AGIVTDFRIINGQRGKLALFKIDDKTAVLEVSADENLINLHRNLLKDDELIVVQAVAQPD
RFSGGLRLKIQQIWDLAAARCRFGKFLRVAVNGTAPAVATLVREFPPKRELTDQGELVRG
LPVRLALQRAGAQCELQLDDRALFFPTDAALASWTAQAHERRAEIVFD
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgttcatccaccttcgcctgcacaccgagttctccgtcgttgacggcaccaaccgcatc
gacgacgtggtcgccgccgcggccgccgatggccagcccgcgctggcgatcaccgacctg
agcaacctgtttggcgcggtcaagttctacaaggctgctcgcggcgagggcgtgaagccg
ctgctgggtgccgaggtgatgctgcagggcttcaccgaagaaacgccgaacgccatgccc
ggcagccaccagccggccgcgccgcgcgtgatcctgctggtgcaggacaagcagggttac
ctgaacctgagcgagctgctggcgcgcgcctggacgcgcagcgacggccggggcggggcg
ctggtccagcgcgaatggctggaagaactcaacggtggtctgctgatgctctcgggcgca
caggccgggccggtcgggcaggcgctgatccagggcgatgcgaaccgcgccgccgacgtg
gccctgaagctcgccggcctgttcacgcaccgcttctacatcgaactgcagcgcgccggc
cgtgtggacgacgagcgccatgtgacggccgccgtgcagctggcggcccgcctgcacctg
ccggtggtggccacgcacccggtgcagtttctggagcccgacgactacgaggcgcacgaa
gcacgcgtctgcatttccgacggcgagatcctgggcaacaaccggcgcgtgcgccgcttc
acgcgcgagcagtacttcaagagtgcggcgcagatggaagcgctgttcgctgacatcccc
agcgccgtggccaacacgctggagatcgccaagcgctgcagcctcacgctggtgctgggc
aaaccgcagctgcccaacttcccgatcccgccggtggatggcgtgatcatgtccgtggag
gactacttccgccacgtctcgtacgaggggctggaggggcggctgaagcacctctttccc
gacgaggccaagcgcgaagccgtgcgcgcgcgctacgtggagcgcctggagttcgagctc
aacaccatcctgaagatgggcttcccgggctacttcctgatcgtgtcggacttcatcaag
tgggccaaggaaaacggctgcccggtgggtccgggccggggttcgggtgccggttcgctg
gtggcctacgcgctgctcatcaccgacctcgacccgctgcagtacaacctgctgttcgag
cgtttcctgaacccggagcgggtgtccatgcccgacttcgacatcgacttctgccagtcg
aatcgcgaccgcgtgatcgactatgtgaaggaccgctacggcaaggacgccgtgagccag
atcgctaccttcggcaccatggccgcgcgcgcggccatccgcgacgtcggccgcgtgctc
gacttttcctatggcttctgcgacggcatttccaagctgatcccgaacaagccgggcatg
tcggtcacgctgcagtacccgccgaatccgaagccggagggcgacaagaacaactacgcg
atcgagatggagccggtgctggccgagcgcatccagaaggaagacgacgtcaagaccctg
atcgagctggcgcaaaagctcgaaggcatgacgcgcaacatcggcatgcacgccggcggc
gtgctgatcgcgccgggcaagctgaccgacttctgcccgctctacatgcagccgggcagc
gactcggcggtgagccagtacgacaaggacgacgtggaggccatcggcctggtgaagttc
gactttctgggcctggccacgttgaccatcctggagatcgcgcgcgagttcatcatgaag
cgccacaagggccaagagaacttccgcttcgaagacattccgctggacgaccagcgcgtg
tatgcgctgttctcgcgcggtcagaccgaagccgtgttccagtttgaaagccgcggcatg
cagggcatgctgaaagacgccaaacccagccggctcgaagacctgattgccctgaacgcg
ctgtaccgcccgggccccatggacctgatccccagcttcgtggcacgcaagcacgggcgc
gaggtgatcgagtacccgcacccgctggtggccgagatgctgagcgagacctacggcatc
atggtctaccaggagcaggtgatgcagaccgcgcagatcctgggcggttattcgctgggc
ggcgccgacatgctgcgccgcgcgatgggcaagaagaaggccgaagaaatggccgagcac
cgcgcgatcttccgcgccggtgcggccaagaacgacatcagcgaagccaaggccgacgag
gtttttgacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcg
tactcgctgctcgcgtaccacaccggctggctcaaggtgcactacaccgccgagttcttc
tgcgccaacatgacggtggaaatggacgacaccgacaagctcaaggtgttgtgggaagac
gcaaagaagatgggcatcagcttcgaggcgcccgatgtgaaccgcgggttccaccgcttc
gagcccatcaccgacaaatccatccgctacggcctgggcgccatcaagggcacgggccag
caggcgatcgaggccatcgtggcggcgcgcgaaggccgcggtgaaggccccaacggtgcc
gagaccggcccattcaagagcctgttcgatttctgccgccgggtggaccgccagcgtctg
aacaagcgcacggtggaagcactcatcaaggccggtgccttcgactcgctgcacctgaac
cgcgccgaggtactggcctcggtggaggtggcgttcgacttcgccgccgccagcgtggcc
aacgccaaccagggtggcctgttcgacatgatgggcgaagacgaccacggctccagcacg
caggagcccgacctggtgtccaccacgccctggggcgtgaaagagcagctgacgctggag
aagatcgccctcggtttctatttctcgggtcatctgttcgatgaggtgcagcgcgaggtg
cggcgttttgcgcgcaccgagctgggcgacgtgaaggagagccgcgacccggtgatcctg
gccggcatcgtgaccgacttccgcatcatcaacggacaacgcggcaagctcgcgctgttc
aagatcgacgacaagacggcggtgctggaagttagcgccgacgagaacctgatcaacctg
caccgcaacctgctgaaggacgacgaactcatcgtcgtgcaggccgtggcccagccggac
cgtttttcgggcggtctgcggttgaagatccagcagatctgggacctggccgcggcccgc
tgccgcttcggcaagttcctgcgcgtggcggtgaacggcacggcgcccgccgtggccacg
ctggtgcgcgaatttcccccgaagcgcgagctcaccgaccagggcgagctggtgcgcggc
ctgccagtgcgcctggccctgcagcgtgccggtgcgcagtgtgaactgcagctggacgac
cgggcgctgttcttcccgaccgatgcggcgctggcgagctggacggcccaggcgcacgag
cggcgtgccgaaatcgtgttcgattga
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