Hydrogenophaga taeniospiralis: KI616_11075
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Entry
KI616_11075 CDS
T08018
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI616_11075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htn03019
]
KI616_11075
03400 DNA repair and recombination proteins [BR:
htn03400
]
KI616_11075
Enzymes [BR:
htn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KI616_11075
Messenger RNA biogenesis [BR:
htn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI616_11075
DNA repair and recombination proteins [BR:
htn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KI616_11075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
ResIII
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UCU97010
LinkDB
All DBs
Position
complement(2223521..2228686)
Genome browser
AA seq
1721 aa
AA seq
DB search
MDSSQIRARRIAAEGRIVSVDVEAHPEKDNQIFAVGAIRSDSLDAYRSACSPAKAASVAA
SLNSFSHGGQVLLGHNLKRHDIPLMRSQLPQLECLNWPVLDTLELSALAFPSNPYHRLVK
GYKLLSDERNNPTKDARVALNVFEEAVEALLETNEQQPWWLEVLHFLLRKDKSMAMLLSQ
VREETTPSGEVVGSIIASRFADRCCATRLQKLVVDITTSLNGDEPWSIAFALGWIRVAGG
SSILPHWVFHELPTVRQLIAELREIDCGRSDCLYCRQNHNPEALLSSLFGKPSFRTHPTT
ADGTSLQRAIVSAGLAGESLLAVLPTGGGKSICYQLPALVHYRRSGRLTVVISPLQSLMR
DQVDNLMKADVQCAATVNGMLTPLERRDVLDRIRLGDVGIVLVSPEQFRSRTFVEAIRMR
EIAAWVFDEAHCLSKWGHDFRTDYLYVSRFIREQFAGQAPIACFTATAKPDVIEDLCGHF
QEGLQIELKRFLGGHERTNLSYAVVPTSGGEKPQRIVELLRDGLRRDDAAVVFCATRKSA
ETIAQIVAQQGIACGCYHGGLTSDLRKETQRRFLDGELQVIAATNAFGMGVDKPNVRLVI
HAEIPGSLENYLQEAGRAGRDGNEARCVLLFDPQDVETQFRLSSTSQLSQRDFIGLLRAL
RLQAKKLGKDEIVISAKELLAQSIGTGIDIDAPDASTKVTTALAWLERHGFLKRNENATK
VFPASLRVATLQEAKERIEKANLSAGIQQKFLAVATALFRSDTPEGLSTDELMLDAGIRP
EECFRIVHQLAKLGILVNDLGLTVRLMRGVRGASASRLEYLSAMEKELVDLMAENAPDAD
QDEAQQHLNLRAVCTELRSRLKLDDERGQLDPTQVRACLRSMADGFGSGNDKRSMIQLQP
LGDDTLRVTLRRPWSQIRRICELRRAVAQVTLTRLLAEVPDGVKGACLVECKAQALIDAL
NEDLILKTQLREPEVALEHALLYLHQTRVLELDKGRSVFRSAMTIRMEEDTSRRFNQASF
APLEEFYKERTLQTHVMHEYAKLGEEDPAKALALVKAYFTLPHKQFIKDFFRGRTDLLER
KTTDESYQRIVDDLQHPVQQALVTQPRTGNHLVLAGPGSGKTRVIVHRIAYLLRVQRVNP
GRIIALAYNRGAAIQLRRRLLTLAGEDARGVLVMTYHAMALRLTGTSLAGAERTSSSVDF
KKMLQDAIDLLEGRSTTLIDADEIRDRLLQGYEYIFVDEYQDIDEQQYALVSALAGRRRA
DADTKLSIMAVGDDDQNIYSFKGANIEFIRRFRADYEGELTYLVENFRSTQNIIAAANHV
IQRGIDRMKVDHPIRIDALRKDDPPGGRWAAIDKNSRGAVRLITSSPTPNLQAQLVYAEI
ERIRRIEPTIKLSEIAVLCRTHAPLEKMRAICDVEGLPCEITGPEAAKGQIALMRTREGW
ALAQALRQRQLRMVRLSALRRWLLSQRRTQPRNAPLLDLLDIVDDVASTLQADIVPAAEA
LDLFYEAAGEMRREGRINAIKLMTAHAAKGLEFDHVIVMDCADWRWDQEDERRLLYVAMT
RARQSLSLMRAEGGRNPYLVDLGTIDGVQDQLPHLRPQHREDLERRYILLDPASMDIGFA
GRKPLDHPVHRAIAALKTGDAVKVKGRFVYSSTGQIVGRLAASVDDTPLQRGTASVVAIM
VRTRSHTPKEYWPSLQVDHWETPLVEVLLVADEVPAESFLL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atcgactcctcgcaaatacgtgctcggcgcatcgccgccgagggtcgaattgtttccgtt
gacgttgaagcccatcctgaaaaagacaaccagatttttgccgtcggcgcgatccgatcg
gacagcctggatgcctatcgcagcgcatgctcccctgccaaagcagcctcggtagcggcg
tccctcaacagcttttcccatggcgggcaggtcttgctgggccacaacctcaagcgccac
gacatcccgctgatgcgcagtcagctgccacagctagagtgcctgaactggcccgttttg
gacacgcttgagctctcagccctcgcctttcctagcaacccgtatcaccgtctagtgaaa
ggctacaagctgctttctgacgagcgcaataacccgaccaaggacgcgcgtgttgcactc
aacgtgttcgaagaggcagtcgaggctctgttggaaacgaacgagcagcaaccttggtgg
ctggaggtcctgcacttcctgcttcgcaaggacaagagcatggcgatgctgttgtcccaa
gtccgagaggagaccactccctctggcgaggtggtagggtccatcatcgccagccgcttc
gcggatcgctgctgcgccacccgtctgcaaaagttggtcgtcgatatcacgacgtcattg
aatggcgacgagccatggtcgatcgcgtttgcattggggtggatccgcgtcgcgggtgga
agctccatcctcccccattgggtgttccacgagttgccgaccgtcaggcaactgatagca
gagctacgggagatcgactgcggtcggtccgactgcctgtattgccgccagaaccacaac
cccgaggcgcttctttcatccctgttcggcaagccaagcttccggacgcacccgacaaca
gccgacggtacatcgctgcaacgcgcgatcgtgagcgcgggattggcgggcgaaagcctt
ttggccgtcttgcctacagggggcggaaaatccatttgctaccagctccccgccctcgtc
cactatcgacgatcagggcggctgaccgtcgtcatctctccactgcaatcgttgatgcga
gaccaggtggacaacctgatgaaggcggacgttcagtgcgccgcgacggtcaatggaatg
cttactccgttggaaagaagggacgttctggatcggattcgcctgggcgacgttggcatc
gtgctcgtctccccagagcagttcagaagtcgtacttttgtcgaagccatccgcatgcgc
gagatcgcagcctgggttttcgacgaagcccactgcctctccaaatggggacacgacttc
cgcacggattatttgtacgtttcgcgcttcatccgagaacagtttgcgggacaggcaccg
atcgcctgctttaccgcaacggccaagccagacgtcatagaggacctttgcggccacttt
caggaaggccttcagattgagctgaagagattcctgggcggtcacgagcgcacgaacttg
tcctatgccgtggtgccaacatcgggtggagagaagccgcagcgcatcgtagagctgctg
cgtgatggcctgcggcgagatgatgctgccgtggtcttctgcgccacccgcaagagtgct
gagaccatcgcacagatcgtcgcgcagcaaggcatcgcctgcggctgttaccacggtgga
ctcacctctgatctgcgcaaagagacccagcgccgcttcctcgacggcgagctgcaggtg
atcgcagccaccaatgcgtttggcatgggagtagacaagccaaacgttcggttggtgata
catgccgagattcctgggtccctagagaactacctccaggaggccggaagagccggacgc
gacggaaacgaggcccgctgtgtcctgctgttcgaccctcaagatgtagaaacccagttc
cgcctgtcctccacctcgcagctgtcgcagcgagacttcattgggctgctgcgcgccttg
cgattacaagccaagaagctgggtaaggacgagatcgttatctccgcgaaagagctgctc
gcgcaaagcataggaacaggcatcgatatcgatgccccggacgcctccaccaaggtcacc
acggcactggcttggcttgagcgccatggctttttgaagcgcaatgagaacgccacgaag
gttttcccagccagtcttcgggtggccactctgcaggaagccaaagagcgcatcgaaaaa
gccaatttgtctgcgggcatccaacagaagttccttgctgttgccacggccctgttccgc
tccgacacacctgaggggctgagcaccgacgagctcatgctcgatgcgggcatccgaccg
gaagagtgctttcgcatcgtccaccagttggccaagctgggcattctggtcaatgacctc
ggtctgactgtgcgcctgatgcgtggcgtgagaggcgcatccgcatctcgccttgaatat
ctgagcgccatggagaaagagcttgtcgatctcatggccgagaacgcgcccgatgccgat
caagacgaagcgcagcaacatctgaatctccgagcggtctgcactgagctgcgcagccgt
ctcaagcttgacgacgaaagaggccaactggacccgacgcaggtcagggcttgcctgcga
tctatggccgatggattcggctccggcaacgataaacgcagcatgattcagctgcagccg
ctgggcgacgataccctgcgcgtaactctgcgtcgaccttggtcccagattcgcagaatc
tgcgaactgcgtcgtgccgtcgcccaagtcacactcacgcgtctgctcgctgaagttccg
gacggtgtcaaaggcgcatgcctagtggagtgcaaggcccaagcactgatcgacgcgctc
aacgaagatttgatcctgaagacgcagctacgcgagccggaagtggccctggagcatgcg
ctgctctaccttcaccagacccgtgtcctcgagctggacaagggtcggtccgtcttccga
tccgcgatgaccatccggatggaagaagacacatcgaggcgcttcaatcaagcctcattt
gctcccctggaagagttctacaaggagcggaccctgcagacgcatgtcatgcacgaatac
gccaagctgggcgaggaagacccggcgaaggcacttgccttggtcaaggcgtacttcacg
ctgccccacaaacagttcatcaaggattttttccgcggacgcacggacctgctggagcgc
aaaaccactgacgagtcgtatcagcgcatcgttgatgacctccaacaccctgtgcagcag
gccctggtcacacaaccgcggacgggaaatcacctggtcctggcgggtccaggctcagga
aagacgcgggtgatcgtgcaccgtatcgcctacttgctgcgtgtgcagcgcgtgaatcca
ggacgcatcatcgcgttggcatacaaccgaggagcggcaattcaactgcgcaggcggctg
ctgacgctggctggagaagatgcgcgcggtgtattggtcatgacctatcacgccatggct
ctgcgcttgacgggtaccagcctggcgggtgcagagcgcacctccagcagcgttgacttc
aagaagatgcttcaggatgcgatcgatctgctcgaaggcagaagtacgacactgatcgac
gccgacgagatccgcgatcggctgctgcagggctacgaatacatcttcgtcgacgagtac
caggacatcgacgagcaacagtacgctttggtcagcgccctcgccggccgtcgacgcgca
gacgccgacaccaagctgagcatcatggcagtcggtgacgacgaccagaatatctactcc
ttcaaaggagcgaacatcgagttcatacggcgctttcgggcagactacgaaggggaactt
acctacctggtcgagaacttccgctccacccagaacatcatcgcggccgccaaccacgtg
atccagcgcggaatcgatcgcatgaaggtcgatcacccaatccgaatcgatgctctgcgc
aaggacgatccgccaggcggacgatgggcagcgatcgacaagaacagccgcggcgcggta
cggttgatcaccagctcccctaccccgaacctccaggcccaactcgtctacgcagagatc
gagcgtatccggcgcatcgagccgacgatcaagctctcggagatcgctgttctttgccgc
acacacgccccgttggaaaagatgagggcaatctgcgatgtcgaaggactgccctgcgag
ataaccggccctgaggcagcaaaaggtcagatcgcgctgatgcgaacgagggaaggctgg
gcattggcccaagcactaaggcagcgccaattgcgcatggtgcgcctcagtgcgctgcgt
agatggctactcagtcagcgacgaactcagcccagaaacgcaccgttactggatctcctg
gacatagtcgatgacgtcgcctccacgcttcaggcagacattgttccggccgcagaagcg
ctggaccttttctacgaagctgcgggcgaaatgcgacgggagggccgaatcaatgccatc
aagctcatgacggcacatgccgccaaaggcttggagttcgaccacgtcattgtgatggac
tgtgccgactggcgttgggaccaagaggatgagcgacgacttctctacgttgccatgaca
cgcgcccggcagtcgctgagcttgatgcgtgcagagggtggtcgcaatccttatctcgtt
gaccttggaaccatagatggcgtacaggatcagctgccgcacctccggccacaacaccgg
gaggatcttgagcgcagatacatcctgctggacccggccagcatggacattggatttgct
ggccggaagccactagaccaccccgtccaccgagcaatcgccgccctaaagactggtgat
gcggtcaaagtcaaaggccgattcgtttactcaagcaccgggcagatagttggtcgactg
gccgcaagcgtcgatgacacccctcttcaacgaggaaccgcatccgtggtcgccatcatg
gtgcgaacacgatcccacactcccaaagaatactggccatccttgcaggtggatcattgg
gaaacaccactcgtggaggtcttgcttgttgccgacgaggtcccagctgagagttttttg
ctgtga
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