Hydrogenophaga taeniospiralis: KI616_12400
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Entry
KI616_12400 CDS
T08018
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
htn
Hydrogenophaga taeniospiralis
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htn03019
]
KI616_12400 (hrpA)
Enzymes [BR:
htn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KI616_12400 (hrpA)
Messenger RNA biogenesis [BR:
htn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KI616_12400 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
NACHT
nSTAND3
AAA_19
AAA_25
T2SSE
SRP54
AAA_30
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
UCU96573
LinkDB
All DBs
Position
2505540..2509433
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AA seq
1297 aa
AA seq
DB search
MSSTPLHIEFPESLPVSARRDEIEAAMREHQVVIVCGETGSGKTTQLPKIALQMGRGKLN
AKPGQRPQWIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLSKDASVKLMTD
GILLAETQTDPDLRAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVVVTSATIDAD
RFAQYFASQRGPAPVIQVSGRTFPVEVRYRPFEESREYDLNNAIADGVDELWRTPQGGDI
LIFLPGEREIREAADHLRKHLSHIPTLRNAEVLPLFARLSQAEQDRIFQDHSGRRIVLST
NVAETSLTVPGIRYVIDAGTARVKRYSFRQKVEQLMVEPISRAAANQRAGRCGRVADGIC
IRLYDEAGFNGRPAFTDPEILRSSLAGVILRMKALRLGAVEDFAFIEPPQKRAIVDGYQL
LSELGAVDEANELTPIGQTLSRLPLDPRVGRMILEAQQRGALDEVMVIASALSVQDVRDR
PMDKQAQADQAHAKFDDEKSEFSGTLKLWKWLDDTKGGHGNDHKLSHRQYENLLRENFIN
VRRVREWRDIHTQLHTVVAEHKWVLNTQPASYEQLHLAMLSGLLGNIGQKNEAEDWYLGA
RGIKFYRHPGANLSKKPGRWIVCAELVETTRLFGRGIANIDPTWLEQVGTHLLKKQLLDP
HWEKKAARVSALERATLYGLVVYHNRRTDYGRVDPAGAREIFIREALVAGDWETRLPFLA
ANQKLVKQVAELEHKSRRQDVLVDDELIYAFYDQQLPADVCSGASFERWFQGAVKLNPKL
LLLTKEELMRHEAAGITTQAFPKTLRLGGVDCTCTYLHEPGDPRDGLSVTVPIFALNQVS
EDRCDWLVPGMLKDKLLALLKTLHQRPRSRLVPLPATAERFATALTEPAVFGAGNLMDAL
LKLVREATQLDIVRNDIKVDMLNAHHFMHLRVVDEHGRQLGQGRSLAALKAELGGQARGA
FQALASLKLESLRPASPEPKAAPALASAGGARRVSAEAPAAAAASATQRHTSWDFGELPE
LMEIRKGGQTLIGFPALMDLGDAVGIEVFDEPEVAMARHREGLRRLFALQIRDALKYLEK
NLPGLMSMATAYMQVGKAENGSGGGTLEELRNQIIELALDRAFLADPLPTDEAAFKKRVE
EGRGRLTLISSEIARNAGLILTEYAAAARKLKDSRPPADVATDIGQQLQRLVPKRFLLTT
PYAQLQHFPRYLKAVQLRLDKHRADPARDAAKLAELRPQDQRFWRMVAERKGVQDARLQE
LRWLLEELRVSFFAQELRTPQPVSVKRLDKAWAQLNT
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctccacgccgctgcacatcgaattccccgagtccctgcccgtctctgcccgccgg
gacgagatcgaggccgccatgcgtgagcaccaggtggtcatcgtctgcggcgaaaccggt
tccggcaagaccacgcagttgcccaagatcgcgctgcagatggggcgcggcaagctcaac
gcgaaaccgggccagcgcccgcaatggatcggccacacccagccgcgccgcatcgcggcc
tccagtgtggccaagcgcatcgccgaggagctgaagacgccgctgggcgacgtggtgggt
ttcaaggtgcgcttccaggaccggctctccaaggacgcctcggtcaagctcatgaccgac
ggcatcctgctcgccgagacgcagaccgacccggacctgcgcgcctacgacaccatcatc
atcgacgaggcgcacgaacgcagcctgaacatcgacttcctgctcggttacctgcgccag
ctgctgccgcgtcggccggacctgaaggtggtggtgacctcggcgaccatcgatgcggac
cggtttgcgcagtacttcgcctcccaacgtggtcctgccccggtcatccaggtctcgggt
cgcacctttccggtggaggtgcgctaccggcccttcgaagagagccgcgaatacgacctc
aacaacgcgatcgccgatggcgtggacgagttgtggcgcaccccacagggcggcgacatc
ctgatctttctgccgggtgaacgcgagatccgcgaagccgctgaccacctgcgcaagcac
ctcagccacatccccacgctgcgcaacgccgaggtgctgccgctgttcgcgcgcctgtcg
caggccgagcaggaccgcattttccaggaccacagcggccggcgcatcgtgctctcgacc
aacgtggccgagacctcgctcacggtaccgggcatccgctacgtgatcgacgccggcacg
gcgcgcgtcaagcgctacagcttccgccagaaggtggagcagctgatggtggagcccatc
agccgggcggcggccaaccagcgcgcgggccgctgcggccgcgtggccgacggcatctgc
atccggctgtacgacgaagccggcttcaacggccggccggccttcaccgaccccgagatc
ctgcgcagctcgctcgcgggtgtgatcctgcgcatgaaggcgctgcgcctgggcgcggtg
gaagacttcgccttcatcgagccgccgcaaaagcgcgccatcgtggacggctaccagctg
ctgtccgagctgggcgcggtggacgaagccaacgagctcacgcccattggccagacgctc
tcgcgcctgccgctggacccgcgcgtgggccgcatgatcctggaggcgcagcagcgtggc
gcgctcgacgaagtgatggtgatcgcctcggcgctctcggtgcaggacgtgcgcgaccgg
cccatggacaagcaggcccaggccgaccaggcgcatgccaagttcgacgacgagaagagc
gagttcagcggcacactcaagctctggaagtggctggacgacaccaagggcggccacggc
aacgaccacaaattgagccaccgccagtacgaaaacctgctgcgcgaaaacttcatcaac
gtgcgccgcgtgcgcgaatggcgcgacatccacacccagctgcacaccgtggtggccgaa
cacaagtgggtcctcaacacgcagccggcgagctacgaacagctgcatctcgccatgctc
tcgggcctgctgggcaacatcggccagaagaacgaggccgaggactggtacctgggcgcg
cgcggcatcaagttttaccgccacccgggcgcgaacctgagcaagaagccaggacgctgg
atcgtctgcgccgagctggtggagaccacgcgcctgttcggtcgcggcatcgccaacatc
gatcccacctggcttgaacaggtgggcacgcacctgctgaagaagcagcttctcgacccg
cactgggaaaagaaagcggcccgcgtctcggccctggagcgcgccacgctgtacggcttg
gtggtctaccacaaccggcgcaccgactacgggcgggtggacccggcgggcgcacgcgaa
atcttcatccgcgaagcgctggtcgccggcgactgggagacgcgcctgcccttcctggca
gccaaccagaaactggtgaagcaggtggcggagctggagcacaagtcgcgccggcaggac
gtgctggtggacgacgagctgatctacgctttctacgaccagcagttgcccgccgacgtg
tgcagcggcgccagcttcgagcgctggttccagggtgcggtcaagctcaaccccaagctc
ctgctgctgaccaaagaagagctgatgcgccacgaggcggcgggcatcaccacgcaggca
ttccccaagacgctgcggctcggcggtgtggactgcacctgcacctacctgcacgaaccc
ggcgacccgcgcgatggtttgagcgtcacggtgccgatcttcgcgctcaaccaggttagc
gaagaccgctgcgactggttggtgcccggcatgctgaaagacaagctgctggcgttgttg
aaaaccctgcaccagcgcccgcgttcacggctggtgccattgcctgcgacggccgagcgc
ttcgccaccgcgctcaccgagcccgcggtgttcggcgccggcaacctgatggacgcgctg
ctgaagctggtgcgcgaagcgacgcagctcgacatcgtgcgcaacgacatcaaggtcgac
atgctgaacgcccaccacttcatgcacctgcgcgtggtggacgaacatggccgccagctc
ggccagggccgcagcctcgcggcgctcaaggccgaactgggtggtcaggcgcgcggtgcg
ttccaggcactggcttcgctcaagctggagagtctgcgcccggcatctcctgagcccaag
gcagcgccggcactggccagcgcgggtggcgcgcgccgcgtatcggcggaagcgcccgca
gcagccgccgccagcgccacccagcgccacaccagctgggatttcggggaactgcccgag
ttgatggagatccgcaaaggcggtcagacgctgatcggcttcccggcactcatggacctg
ggcgacgcggtcggcatcgaagtgttcgacgaacccgaggtcgcgatggcacgccaccgc
gagggcctgcgccgcctgttcgcgctgcagatccgcgacgcgctgaagtacctggaaaaa
aacctgcccggcctgatgagcatggccacggcctacatgcaggtgggcaaggcggagaat
gggtcgggtggcggcacgctggaagagctgcgaaaccagatcatcgaactcgcgctggac
cgggccttcctggccgatccgctgcccaccgacgaggccgcgttcaagaagcgggtggaa
gagggccggggccggctcacgctgatctcatccgagatcgcgcgcaacgccggcctgatc
ctcaccgaatacgcggccgccgcgcgcaagctcaaggacagccgaccgcccgccgacgtc
gcgaccgacatcggccagcagctgcagcgcctggtgcccaagcgctttctgctgaccacg
ccgtatgcgcagctgcagcactttccgcgttacctgaaggctgtgcagctgcggctggac
aagcatcgcgccgacccggcgcgcgacgccgcgaaactggccgaactgcgaccgcaggac
cagcgcttctggcgcatggtggccgagcgcaagggcgtgcaggacgcgcggctgcaggaa
ctgcgttggttgctcgaagaactgcgcgtgagcttcttcgcgcaggaactgcgcacaccg
cagccggtgagcgtgaagcggctggacaaggcctgggctcaactgaacacctga
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