Hydrogenophaga taeniospiralis: KI616_16485
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Entry
KI616_16485 CDS
T08018
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03030
DNA replication
htn03410
Base excision repair
htn03420
Nucleotide excision repair
htn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI616_16485 (polA)
03410 Base excision repair
KI616_16485 (polA)
03420 Nucleotide excision repair
KI616_16485 (polA)
03440 Homologous recombination
KI616_16485 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
htn03032
]
KI616_16485 (polA)
03400 DNA repair and recombination proteins [BR:
htn03400
]
KI616_16485 (polA)
Enzymes [BR:
htn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KI616_16485 (polA)
DNA replication proteins [BR:
htn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI616_16485 (polA)
DNA repair and recombination proteins [BR:
htn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KI616_16485 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI616_16485 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
YrbL-PhoP_reg
Motif
Other DBs
NCBI-ProteinID:
UCU92436
LinkDB
All DBs
Position
complement(3453104..3455935)
Genome browser
AA seq
943 aa
AA seq
DB search
MSDEKTPTPTLLLVDGSSYLYRAFFAGGDAMSTTLPDGTVQKTGAIRILINMMQKLLKDH
PAAYGACVFDAKGPTFRDAIYPEYKAQRSPMPDDLRSQIAPIHEVVRLMGWPVLDVPGVE
ADDVIGTLAVTAASQGINVIISSGDKDLAQLVNEHIAIIDTMSGKVRDLAGVEAEFGVPA
RLMLDYQMLVGDQVDNVPGVQGVGPKTAVKLLQEYGSVDALVAQADQIKGAVGEKLRKAL
DWLPTGRQLLTIKTDCDLNGWVPDMPALDAIRIGQPQTEPLKTFYETYGFKGLAKALGGD
ERPSSTPRPSGERAGVRGAPTNDLFSEAGPVEASETSATPSSGSLAYDTILTWDLFNTWL
AKVEAADLVAVDTETTSLDEMVAQIVGISFSVTPGEAAYIPLKHAGPDAPEQLPFDEVLA
KLKPWLENPTKHKLGQHIKYDRHVFANHGIEVQGYVHDTMLQSYVLEVHKPHGLASLAER
HLGRSGINYEDLCGKGAHQIPFAQVDVAKASEYSCEDSDQTLDVHRALWPQLDADAKLRF
IYELEIASSEALYRIERNGVLIDAPTLAKQSHELGQRIFALEQEAYEIAGQPFNLASPKQ
LGEIFFDKLGLPVIKKTATGARSTDEEVLEKLAEDYPLPAKILEHRSLAKLKGTYTDKLA
QLANPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTAEGRKVREAFVAPAGSVIASAD
YSQIELRIMAHLSGDAALLRAFQAGEDVHRATASEVFGITPAEVSNEQRRYAKTINFGLI
YGMGTFGLAKSLGIENAAAKTYIDRYFARFSGVKQYMDDTRALAKAQGYVETVFGRRLVL
PDIQNAKGAKQAALERQAINAPMQGTAADLIKLAMVAVQKALDEQGRATKMIMQVHDELV
FEVPLAEVDWLKTEIPRLMAGVAALKVPLLAEVGVGANWDQAH
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgaaaaaacgcccacccccaccctgttgctggtcgatggttccagttacctc
taccgcgccttctttgccggcggtgacgccatgagcaccaccttgcccgacggcacggtg
cagaagaccggtgccatccgcatcctgatcaacatgatgcagaagctgctcaaagaccac
cccgccgcgtacggcgcctgcgtgttcgatgccaaaggcccgactttccgcgacgccatc
taccccgaatacaaggcccagcgcagccccatgcccgacgatttgcgcagccagatcgct
cccattcacgaggtggtgcgcctgatgggctggccggtgctcgacgtgcccggcgtcgag
gccgacgacgtgatcggcaccctggccgtgacggcggcgagccagggcatcaacgtgatc
atctccagcggcgacaaggacctcgcccagctggtgaacgaacacatcgccatcatcgac
accatgagcggcaaggtacgcgatctggccggggtggaggccgaattcggcgtgccggcc
cgtctgatgctggactaccagatgctggtgggcgaccaggtcgacaacgtgcccggtgtg
cagggcgtgggccccaagaccgccgtgaagctgttgcaggaatacggttcggtggacgcc
ctggtggcgcaggccgaccagatcaagggcgcggtgggcgagaagctgcgcaaggcgctc
gactggctgcccaccggccgccagctgctgaccatcaagaccgactgcgacctgaacggc
tgggtgcccgacatgcccgcgctcgacgcgatccgcatcggccagccccagaccgaaccg
ctcaagaccttctacgagacctacggcttcaagggccttgcgaaggcgctgggcggcgac
gagcgcccatcttcaaccccacgcccctctggggagagggccggggtgaggggcgcgccc
accaacgacctcttcagcgaagccgggccagtcgaggccagcgaaacgtccgcaacccct
tccagcggcagcctcgcctacgacaccatcctcacctgggacctcttcaacacctggctc
gccaaggtggaagccgccgatctcgtggctgtggacaccgaaaccacctcgctcgacgaa
atggtggcccagatcgtcggcatcagcttcagcgtgacacccggcgaagccgcctacatc
ccgctcaaacacgccggccccgatgcgcccgagcagttgccgttcgacgaggtgctggcg
aagctcaagccctggctggagaacccgaccaaacacaagctcggccagcacatcaagtac
gaccgccatgtgttcgccaaccacggcatcgaggtgcagggctatgtgcacgacaccatg
ctgcagagctacgtgctcgaggtgcacaagccgcacggcctggccagcctggccgagcgc
cacctgggccgcagcggcatcaactacgaagacctgtgcggcaagggcgcgcaccagatc
ccgtttgcccaggtggacgtggccaaggcatccgaatattcgtgcgaagacagcgaccag
acgctcgacgtgcaccgcgcgctctggccgcagctggacgccgatgcgaaactgcgcttc
atctacgaactggagatcgccagcagtgaagcgctctaccgcatcgagcgcaacggcgtg
ctgatcgacgcacccacgctggccaaacagagccacgagctgggccagcgcatctttgcg
ctggagcaggaggcgtatgaaattgcggggcagcccttcaacctggccagccccaagcag
ctcggcgaaatcttcttcgacaagctcggcctgcccgtcatcaaaaaaaccgccaccggc
gcccggagcaccgacgaagaggtgctggaaaaactcgccgaagactacccgctgcccgcc
aagatcctggagcaccgcagcctcgccaagctcaagggcacctacaccgacaagctggcc
cagctcgccaacccgcgcaccggtcgcgtgcacacccactacgcccaagccgtggccgtg
accgggcggctgtcgagcaacgaccccaacctgcagaacatccccatccgcacggccgaa
ggccgcaaggtgcgcgaagccttcgtcgcgcccgctggcagcgtgatcgccagcgccgac
tactcgcagatcgagctgcgcatcatggcgcacctgagcggcgacgcggccttgctgcgc
gccttccaggccggtgaagacgtgcaccgcgccaccgcgtccgaggtgttcggcatcacg
ccagccgaggtcagcaacgagcagcgccgctacgccaagaccatcaacttcggcctcatc
tacggcatgggcacctttggcctcgccaagtcgctgggcatcgagaacgcagccgccaag
acctacatcgaccgctactttgcgcgcttctcgggcgtcaagcagtacatggacgacacc
cgcgccctggccaaggcacagggctacgtggagaccgtgttcgggcgccgcctggttttg
ccggacatccagaacgccaagggcgcgaagcaggcagcgctggagcgccaggccatcaac
gcccccatgcaaggcaccgcggccgacctgatcaagctggccatggtggcggtgcagaag
gcgctggacgagcagggcagggccacgaaaatgatcatgcaggtgcacgacgaactggtg
ttcgaagtgcccttggcggaagtggactggctcaagaccgagatcccgcgcctgatggcc
ggtgtggctgcgctcaaggtgccgctgctggcggaggtgggggtgggggcgaactgggat
caggcgcactga
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integrated database retrieval system
