Hydrogenophaga taeniospiralis: KI616_17575
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Entry
KI616_17575 CDS
T08018
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI616_17575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htn03019
]
KI616_17575
Enzymes [BR:
htn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI616_17575
Messenger RNA biogenesis [BR:
htn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI616_17575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UCU92632
LinkDB
All DBs
Position
3697619..3699427
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AA seq
602 aa
AA seq
DB search
MNFEELNLAPAIVQAVREHGYETPTPIQAEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML
HRLSIGERAKSKFGGIAIRALVLTPTRELAAQVEESVRTYGKHLSLTSTVIFGGVGMNPQ
INAMKRGVDILVATPGRLLDLQQQGFLDLSGVQMLVLDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLANNLLKDPLSIQVTPRNTTVQRITQVIHPVGRGKKKQLLVH
IINQHNWSQVLVFTRTKFGANNVAEFLTKNGIQAMALHGNKSQGARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGKSGEAVNLVSLDEEGFMM
DIERFTKQQIPVQIFQEFMPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMAAAAKAARTEM
LQRVREKKADAPQGARGNGGGQRQRPAAQGDGQPRGEGARDGQRADGRRNAGPGRNGPAN
GPRNGPPRSGGNAPRNAERADRGPREDRGPREDRGDGSERQPGPNAHLGSLRIREPRARA
AAPGGQPDPLRTSIDSIGGRGRGNGGGGGNGNRGGRGGPGRGDGPRGGGPADPLRTSFGR
IR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgaagaactgaacctggccccggccattgtccaagctgtgcgcgagcacggt
tacgaaacccccacccccatccaggccgaggcgatccccgccgtgctggccgggcgcgat
ctgctcggtggtgcccagaccggcaccggcaagaccgccgccttcaccctgcccatgctg
caccggctgagcatcggcgagcgcgccaagagcaaattcggcggcatcgcgatccgtgcc
ctggtgctcacgcccacccgcgaactcgcggcccaggtcgaagagtcggtgcgcacctac
ggcaaacacctctcgctgacctccaccgtcatcttcggcggcgtcggcatgaacccgcag
atcaacgccatgaagcgtggcgtggacatcctggtggccacgcccggccgcctgctcgac
ctgcagcagcagggctttctggacctctccggcgtgcagatgctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaagatcctggccctggtgccg
aaagaaaagcagagcctgctgttctcggccaccttcagcgacgagatccgcgacctggcc
aacaacctgctcaaggacccgctgagcatccaggtgaccccgcgcaacaccacggtgcag
cgcatcacccaggtgatccaccccgtgggtcgcggcaagaaaaagcagttgctggtgcac
atcatcaaccagcacaactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgagttcctgacgaaaaacggcatccaggcgatggcgctgcacggcaac
aagagccaaggtgcccgcacccaggcgctggccggcttcaagagcggcgacatccgcgcc
ctggtggcgaccgacatcgcggcgcgaggcatcgacatcgacgagctgccgcacgtggtg
aactacgagattccgaacgtcagcgaagactatgtgcaccgcatcggccgcaccggccgc
gcgggcaagagcggtgaagccgtcaacctcgtgagcctggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaacagatcccggtgcagatcttccaggagttcatgcct
gagccgggtgagaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcc
ggcaagccgccgagccgcgacgtgatggccgctgctgccaaggccgcgcgcaccgagatg
ctgcagcgcgtgcgcgagaagaaagccgatgcaccgcaaggcgcccgcggcaacggcggt
ggccagcgccagcgtccggcggcgcaaggtgatggtcagccgcgcggcgaaggcgcccgc
gacggtcaacgcgccgacggccgccgcaatgccggcccaggccgcaatggcccggccaac
ggtccccgcaacggcccgccgcgcagcggtggcaacgcaccgcgcaatgccgagcgcgcc
gaccgtggacctcgtgaagaccggggcccgcgcgaagaccgtggtgacggcagcgagcgc
cagcccggcccgaacgcgcacctgggtagcctgcgcatccgcgagccgcgcgcgcgcgcc
gcagcgccgggtggtcagcccgatccgctgcgcaccagcatcgattcgatcggtggacgt
ggtcgcggcaacggtggcggtggtggcaatggcaaccgcggtggccgaggcggcccgggt
cgtggcgatggtccgcgcggtggtggcccggccgatccgctgcgcaccagcttcggtcgc
atccgctga
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