Hydrogenophaga taeniospiralis: KI616_18030
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Entry
KI616_18030 CDS
T08018
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KI616_18030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htn03021
]
KI616_18030 (rpoD)
Transcription machinery [BR:
htn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KI616_18030 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
DUF6522
Motif
Other DBs
NCBI-ProteinID:
UCU92716
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All DBs
Position
3780580..3782898
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AA seq
772 aa
AA seq
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MPAKKSSTPVQSSTKTATKAKAGTAAPEVPKKTSVTAKMPAKPAAKSPARKTAADELDVV
DASAESKKKAGRPAKAASADKPAAKRGRKPKAAAKEGADLDDADLSDIEDDLTGEVEAET
EVVDATAQPVEKVKPLRMKISKAKERALMKEFGLDETVLSEEEAKNRRERLKTLIKLGKT
RGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLLNNTGPTAATEE
EAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNDMMAAI
SESPATIADILAMAEDIREGKVVISTVVDGFADADAADDYVAEEDFDDYDEADDDDGKGG
SKALTRKLEELKREALTRFDTLRTLFEKLHKTYDKEGYGTPTYLKTQLAITETLMSIRFT
AKAIEKLCSTMRSQVDEVRKKERELRRIIVDKCGMPQDKFIADFPANLLNLKWVEKQAAA
GKPWSVIMQRNIPPVQELQTGLMNIQSSVVVPLAHLKDIHKRMNSGESTSRDAKKEMIEA
NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS
IADQARTIRIPVHMIETINKMNRISRQHLQEHGFEPDASILAEKMEMPEDKIRKIMKIAK
EPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLRDVVKEILDSLTPREAKVLRMR
FGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFIDSM
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgaagaagtccagtacgcctgtccagtccagcacaaaaacagccaccaaggcc
aaagctggcacagccgctcccgaagtgcccaagaaaacctctgtgaccgccaagatgcct
gccaaacccgctgccaaatcccccgcccgcaagaccgctgccgacgagctcgacgttgtc
gacgcgagcgccgagtcgaagaaaaaggcgggccgcccggccaaagccgcttcggccgac
aaacccgctgccaagcgcggccgcaaacccaaggccgctgccaaagaaggcgccgacctg
gatgacgccgacctgagcgacatcgaagacgacctgaccggtgaagtcgaagccgagacc
gaagtggtcgacgccaccgcccagccggtcgagaaggtcaagccgctgcgcatgaagatc
agcaaggccaaggagcgcgcgctgatgaaggaattcggcctggacgagaccgtcctgtcc
gaagaagaagccaagaaccgccgcgaacgcctgaagaccctgatcaagctgggcaagacg
cgcggctacctgacgcacggcgaaatcaacgaccacctgcccgacaagctggtcgaggcc
gagacgctggaagtggtggtttcgctgctgaacgacatgggcgtggccgtctacgaacag
acgcccgacgccgaaaccctgctgctgaacaacaccggcccgaccgccgcgaccgaagaa
gaagccgaagaagaagccgaagcggcgctctccacggtggactcggaattcggccgcacc
accgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctgacacgcgaa
ggcgaaattgaaatcgccaagcgcatcgaaggtggcctgaacgacatgatggccgccatc
agcgagagcccggccaccatcgccgacattctggccatggccgaggacatccgagaaggc
aaggtcgtgatctccaccgtggtggacggttttgccgatgccgacgcggccgacgattac
gtggccgaagaagatttcgacgactacgacgaagccgatgacgacgacggcaagggcggc
tccaaggccctcacccgcaagctcgaagaactcaagcgcgaagcgctgacccgcttcgac
accctgcgcacgctgttcgagaagctgcacaagacctacgacaaggaaggctacggcacg
ccgacctacctgaagacgcagctcgccatcaccgagacgctgatgtcgatccgcttcacc
gccaaggccatcgaaaagctgtgcagcaccatgcgcagccaggtcgacgaagtgcgcaag
aaagagcgcgaactgcgccgcatcatcgtggacaagtgcggcatgccgcaggacaagttc
atcgccgacttcccggccaacctgctgaacctgaagtgggttgaaaagcaggccgctgcc
ggcaagccgtggagcgtgatcatgcagcgcaacatcccgccggtgcaggaactgcagacc
ggcctgatgaacatccagagcagcgtggtcgtgccgctggcgcacctgaaagacatccac
aagcggatgaactcgggcgagtccacgtcgcgcgacgcgaagaaggaaatgatcgaggcc
aacctgcgcctcgtgatctccatcgcgaagaagtacaccaaccgcggcctgcagttcctg
gatctgatccaggagggcaacatcggcctgatgaaggctgtggacaagttcgaataccgc
cgcggctacaagttctcgacctatgccacctggtggatccgccaggcgatcacgcgctcg
atcgccgaccaggcgcgcacgatccgcatcccggtgcacatgatcgagacgatcaacaag
atgaaccgcatctctcgtcagcacttgcaggagcacggcttcgagcccgatgcgtccatc
ctggccgagaagatggagatgccggaagacaagatccgcaagatcatgaaaatcgcgaaa
gagccgatctcgatggaaacccccatcggcgacgacgacgattcgcacctgggcgatttc
atcgaagaccaggcgaacactgcgcccatcgaggctgcgatgcaggccggtctgcgcgac
gtggtcaaggaaatcctcgacagcctgacaccgcgcgaagccaaggtgttgcgcatgcgt
ttcggcatcgagatgtcgaccgaccacacgctggaagaagtgggcaagcagttcgacgtg
acgcgtgagcgcatccgtcagatcgagtccaaggcggtgcgcaagctcaagcacccgagc
cgttcggacaagctgcgcagcttcatcgattcgatgtaa
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