Hydrogenophaga taeniospiralis: KI616_20835
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Entry
KI616_20835 CDS
T08018
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI616_20835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htn03019
]
KI616_20835
Enzymes [BR:
htn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI616_20835
Messenger RNA biogenesis [BR:
htn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI616_20835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
UCU93219
LinkDB
All DBs
Position
complement(4399033..4400517)
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AA seq
494 aa
AA seq
DB search
MTLSFSQLSLSPSLERAVAEMGYENMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLP
LLQRMMKHDNTSTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTNLRSTVVFGGIDMK
PQTAELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSF
LPKQRTTLLFSATFSTEIKRLANSYLQDPVTIEVARSNATASTVEQHFYRVEDDDKRGVL
KQILRERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKSGAV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDTRL
MGDLEKLLGKKLELEALELEADKRPAGHFNDGQRAWQQPETAREERDIRESRGSRPEREA
RAPSSRPVRAPRAPADPLFDKPYEPSLAAEATPSWEAAQKPASRLSPNIKTRKKVPALFK
SAPVAPVTPVTDNS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaccctatccttctcccaactctctctctctccttcgctggagcgcgccgtggccgaa
atgggctacgagaacatgacgccgatccaggcgcaggccatccccgtggtgctgcaggga
cgtgacgtgatgggcgccgcccagacgggcaccggcaagaccgcagccttcacgctgccg
ctgctgcagcgcatgatgaagcacgacaacacgtccacttcgcccgcgcgccacccggtg
cgcgcgctggtgctgctgcccacgcgcgagctggccgaccaggtggccgaacaggtcaag
ctctacgccaagtacaccaacctgcgcagcaccgtggtgttcggtggcattgacatgaag
ccacagaccgccgagctgaagaagggtgttgaagtgctggtggccacgccggggcgtctg
ctcgaccacatcgaagccaagaactgcgtgttgaaccaggtcgaatacgtcgtgctcgac
gaggccgaccgcatgctcgacatcggtttcctgcccgacctgcagcgcatcctctcgttc
ctgcccaagcagcgcaccacgctgctgttttcggccacgttctcgaccgagatcaagcgc
ctggccaacagctacctgcaggacccggtaaccatcgaggtcgcccgctccaacgccacc
gcgtctaccgtcgaacagcatttctaccgcgtggaagacgacgacaagcgcggcgtgctc
aagcagatcctgcgcgagcgcggcctcaagcaggccttcgtgttcgtcaacagcaagctc
ggctgtgcgcgtctggcgcgttcgctggagcgcgagggcctcaacaccacggccctgcac
ggcgacaagagccaggacgaacgcctgaaggcgctcgaagccttcaagagcggcgcggtc
gacctgctggtgtgtaccgatgtggccgcccgcggcctggacatcaaggacgtgcccgcg
gtgttcaacttcgacatcccgttcaacgccgaagactatgtgcaccgcatcggccgcacc
ggccgcgcgggcgcgtcgggtctggcggtgtcgtttgtcagcgggcgcgatacgcgcctg
atgggcgatctggaaaaactgctgggcaagaagctggagctcgaagcgctggaactcgaa
gcggacaaacgcccggccggtcacttcaacgatggccagcgcgcctggcagcagcccgaa
acggcgcgcgaagagcgcgacatccgtgagagccgcggcagccgtcccgagcgtgaggcg
cgtgcgccgtcgagccgcccggtgcgcgcaccccgtgcgcccgccgatcccctgttcgac
aagccttacgagcccagcctggccgccgaggccacgccgtcctgggaagccgcgcagaag
ccggccagccgcctgtcgcccaacatcaagacccgcaagaaggtgccggcgctgttcaag
agcgcgccggtggcccctgtgacccctgtgaccgacaacagctga
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