Hydrogenophaga taeniospiralis: KI616_24250
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Entry
KI616_24250 CDS
T08018
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
htn
Hydrogenophaga taeniospiralis
Pathway
htn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KI616_24250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htn03021
]
KI616_24250 (rpoC)
03400 DNA repair and recombination proteins [BR:
htn03400
]
KI616_24250 (rpoC)
Enzymes [BR:
htn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KI616_24250 (rpoC)
Transcription machinery [BR:
htn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KI616_24250 (rpoC)
DNA repair and recombination proteins [BR:
htn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KI616_24250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UCU93819
LinkDB
All DBs
Position
complement(5140155..5144369)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLILDMTLRDIERVLYFEAYVIVDPGMTPLKKFAIMSEDDFDAKRKEFGDEFIAKM
GAEGIKELLQAIDLDIEIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQIEART
LMLASNNILFPANGEPSIVPSQDVVLGLYYATRERINGKGEGMIFADLLELQRALDNGAV
EITAKISVRLQQYTLDKATGEFTPFISLVDTTVGRALLSEILPKGLPFEVLNKPLKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISIAVDDMLVPKEKPAIIERSEKEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLAKQKTTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVNSQDCGTTNGTVMRAIVEGGEVIESLRDRILG
RTTCDEVIHPETRAVLLPAGTLLDEDMLDELEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGSIGFN
ATMRYVTNTKGELVVIARSGEIIIHDEIGRERERHKVPYGAILAVKADQAIKAGAILANW
DPLTRPIITEFAGQVKFENVEEGLTVAKQVNDVTGLSSLVVIDPKHRGSTKVVRPLVKLL
DAQGNEVKIPGTDHSVTVGFQIGALLEVRDGQDVGPGHVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKVRLQITDPEGKIWDELIPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVIVDSVGDSSYIAGEQVERSEILNTNDALRAEGKLPAVYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEERRA
IAEADAVSLAADQADASSTNEAAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactcgacctgttcaagcagttcacgcccgacgagcatttcgatgccatc
cgcatcggcctggcttcgccggaaaaaatccgctcgtggtctttcggcgaagtcaaaaag
cccgagaccatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaaatacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgaa
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaaatcgctg
ccgtcgcgtctgggcctgatcctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
tttgaagcctatgtgatcgtcgatccgggcatgaccccgctgaagaaattcgcgatcatg
tcggaagatgactttgacgccaagcgcaaggaattcggcgacgaattcatcgccaagatg
ggcgccgaaggcatcaaggaattgctgcaggcgatcgacctcgacatcgagatcgagaag
ctgcgcaacgacctgaccggctccgagctcaagatcaagaagaacgccaagcgcctgaag
gtgctggaagccttcaagaagtcgggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttcgcgacc
tccgacctgaacgacctgtaccgtcgcgtcatcaaccgcaacagccgtctgcgccgtctg
ctcgaactcaaagcgcccgagatcatcgcgcgcaacgagaagcgcatgctgcaggaagcc
gtggactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacgctcaag
ctgcaccagtgtggcctgcccaagctgatggccctggagctgttcaagcccttcatcttc
tcgcgcctggaagccatgggcatcgcgaccaccatcaaggccgcgaagaaggaagtcgaa
gccggcacgccggtggtgtgggacatcctggaagaggtgatcaaagagcacccggtgatg
ctgaaccgcgcacccacgctgcaccgcctgggtatccaggccttcgaacccatcctgatc
gaaggcaaggcgatccagctgcaccccctcgtttgcgcggccttcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccactgtcggtggaagcgcagatcgaagcccgcacc
ctgatgctggcctcgaacaacatcctgttcccggccaacggcgagccctccatcgtgccg
tcgcaagacgtggtgctgggtctgtactacgcgacccgcgagcgcatcaacggcaagggc
gaaggcatgatcttcgccgacctgctggagctgcagcgcgcgctggacaacggcgcagtc
gagatcacggccaagatcagcgtgcggctgcagcagtacacgctggacaaggccacgggc
gaattcacgcctttcatttccctggtcgatacgacggttggccgcgcgctgctgtccgag
atcctgcccaagggcctgccttttgaggtgctgaacaagccactgaagaagaaggagatc
tccaagctgatcaacgtgtccttccgcaagtgcggcctgaaagagaccgtggtcttcgcc
gacaagctgctgcagaacggtttccgcctggcgacccgcgccggcatctcgattgctgtg
gacgacatgctggtgccgaaggaaaagccggccatcatcgagcgttcggagaaagaggtc
aaagagatcgcccagcaatacgcttcgggtctggtgaccgcaggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgagatctccaaggtcatgatggcccagctg
gccaagcagaagaccaccgaccgccacggcaaggaagtggaccaggagtcgttcaactcc
atctacatgatggccgactcgggtgcccgcggtagcgcggcccagatccgccagctggcc
ggcatgcgcggcctgatggccaagcccgacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggtctgaacgtgttgcagtacttcatctccacccacggcgcccgaaag
ggcctggccgacacggcgctgaagaccgcgaactcgggttacctgacccgccgtctggtg
gacgtgacgcaggatctggtggtcaacagccaggactgcggtacgaccaacggcaccgtg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgcatcctgggc
cgcaccacctgcgatgaagtgatccacccggagacccgcgcggtcctgctgccggccggc
accctgctggacgaagacatgctcgacgagctggaagccgctggcgtggacgaggtcaag
gtgcgcaccgcactgacctgcgaaacccgcttcggcatctgcgccaagtgctatggccgc
gacctgggccgcggtggcctggtgaacatcggcgaagccgtcggtgtgatcgcagcccag
tcgattggcgaacccggcacgcagctgaccatgcgcaccttccacatcggtggtgcggcg
tcgcgtgcggccgtggcctccagcgtggaagccaagtccagcggttcgatcggtttcaac
gccaccatgcgttatgtgaccaacaccaagggcgagctggtggtgattgcgcgttccggc
gaaatcatcatccacgacgaaatcggccgtgagcgcgaacgccacaaggtgccctacggc
gccatcctggcggtcaaggccgaccaggccatcaaggctggcgcgatcctggccaactgg
gacccgctgacccgacccatcatcacggaattcgccggtcaggtgaagttcgagaacgtg
gaagaaggtctgacggtggccaagcaggtcaacgacgtgaccggtctgtcctcgctggtg
gtgatcgatccgaagcaccgcggttcgaccaaggtggtgcgccccctggtcaagctgctc
gacgcccagggcaacgaagtgaagatccctggcaccgaccactcggtgacggtgggcttc
cagatcggcgcgctgcttgaagtgcgcgacggtcaggacgtcggccccggccacgtgctg
gcccgcatcccggtcgaaggccagaagacgcgcgacatcaccggcggtctgccgcgtgtg
gccgagctgttcgaagcccgcagcccgaaagacaagggcatgctggccgagatgaccggt
accgtgtcgttcggcaaggaaaccaaaggcaaggtccgtctgcagatcaccgatccggaa
ggcaagatctgggacgaactcatccccaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagagcgtggtcgacggtccggccgatccgcaggacatcctgcgc
ctgctgggcatcgaagagctgtcgcgctacatcgttgacgaagtgcaggacgtgtaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtgatcgtcgacagcgtgggcgattcgtcgtacatcgctggcgagcaggtcgagcgt
tcggagatcctcaacaccaacgacgcgctgcgcgccgagggcaagctgcccgcggtctac
agcaacgtgctgctgggtatcaccaaggcctcgctgtccacggactccttcatctcggcg
gcttccttccaggaaaccacccgcgtgctcaccgaggcggccatcatgggcaagcgcgac
gagctgcgtggcctgaaggaaaacgtgatcgtcggtcgcctgatcccggccggtaccggc
atggcgtaccacgaagcgcgcaaggtcaaggagaagatggacgacgaagagcgccgtgcc
atcgccgaagccgatgctgtgtcgctggcggccgatcaggccgacgcttcgagcaccaac
gaagcggccgaataa
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integrated database retrieval system
