Hypericibacter terrae: FRZ44_14690
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Entry
FRZ44_14690 CDS
T06396
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
htq
Hypericibacter terrae
Pathway
htq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ44_14690 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htq03019
]
FRZ44_14690 (rne)
03009 Ribosome biogenesis [BR:
htq03009
]
FRZ44_14690 (rne)
Enzymes [BR:
htq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FRZ44_14690 (rne)
Messenger RNA biogenesis [BR:
htq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRZ44_14690 (rne)
Ribosome biogenesis [BR:
htq03009
]
Prokaryotic type
rRNA processing factors
FRZ44_14690 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEX16177
UniProt:
A0A5J6MGF2
LinkDB
All DBs
Position
complement(1582835..1586041)
Genome browser
AA seq
1068 aa
AA seq
DB search
MTKHMLIDATHPEETRVVVVSGKRLEEFDAEIASKKALKGNIYLAKIVRVEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYRIPIADREALQAELEAEAAANERSDDDDDDDADDSSHTKTE
GAERVEAEPASDDADLIDSTQGEDGGEGEAYDRGDDRPAEYDRPASYAMPEFSSDGEAAD
EGDDAAERAGPDFDRETEESASEDRVDPDDAARSDDAMALRQSGDSENRLEGPSYETDDG
ANEGMGNRDAVEGMAADRGESIAGGAETRPDELPAAPVGGGIEDRAPVAAAPLDVVGGDE
AEEEEQPRRPRSLRRYKIQEVIKRRQIMLVQVTKEERGNKGAALTTYLSLAGRYCVLMPN
TARGGGVSRKITSANDRKRLKSVIGDLEIPKGMAVIVRTAGSERNRTEIKRDYEYLLRLW
GEIRDLTLRSTAPELIYEEANLIKRSIRDLYTRDIEDIQVEGDEGYKAAKAFMKMLTPSH
ARRVIHYRDPSMPLFQRHQVETQLDALHNPTVQLRSGGYIVINQTEALVAIDVNSGRATR
ERNIEDTALRTNMEAAEEVARQLRLRDLAGLIVIDFIDMEEQRHNAQVERRLKEAMRTDR
ARIQIGRISPFGLLELSRQRLRPSLVEASTEICRLCRGLGRVRSTESTALHVLRGVEEEG
TRRRGPGITVSVPTAVALFILNQKRRALAEIEIRHGFRVYLTGDDHLIPPEYRIERLRAL
APGEELPMPATSLPAPAVLDEPEDEIEIEDEAEIEDRLEPEDGDVAPAEPREARNDRGDR
GDRGDRGDRAEQGGENERGGRRRRRRRRGGRGRDGEDNRREGGRDGDGQRREGPVPVAAE
RPIENQPRRSEFVADDMTPAEAAEGPGNATAPQPREGQDEAQAPGAGDARRRRRRGRRGG
RRRSRRRQEGGLPGEAPAPQVGLENDPGEPQEQPRGPRPLVTPADFDRDWPYNEPDDEIE
DADGNVEAEVPEDDAELENEETGDESETPVESARDRPHDQPAHGHAHRNHEEAAPAATLV
APAEPAHAAERQEQPAPSHRAEEPARVVLPEPKSEPQPTKRGWWRRGS
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaacacatgctgatcgatgccacccacccggaagaaacacgggtcgtggtggtt
tccgggaaacgacttgaagaattcgacgccgagatcgccagcaagaaagccctcaagggc
aacatctatctcgcgaagatcgtccgggtcgaaccgtcgctgcaggccgccttcgtcgac
tacggcggcaatcgccacggcttcctggccttcaacgaaatccatcccgactattaccgg
atcccgatcgccgatcgcgaggcgctccaagccgaactcgaggccgaagcggccgccaac
gagcgctcggacgacgacgatgacgacgacgccgacgattcgagccacaccaagaccgag
ggcgccgagcgggtcgaagccgaaccggcctccgacgacgccgatctgatcgattcgacg
caaggcgaggacggcggcgaaggcgaagcctacgatcgcggcgacgacaggccggccgaa
tacgaccgtccggcttcctatgcgatgccggaattctcgtccgacggcgaagccgccgac
gaaggcgacgatgccgcggaacgtgccggtccggatttcgaccgcgagaccgaggaatcg
gcgagcgaagaccgcgtcgaccccgacgatgcggcgcgcagcgacgacgcgatggcgctg
cgccagagcggcgattcggaaaaccgcctcgaaggcccgtcttacgagaccgacgacggc
gccaatgagggcatgggcaatcgcgatgcggtcgaaggcatggccgccgatcgcggcgaa
tcgatcgcgggcggcgccgagacgcgtcccgacgagctgccggcggccccggtcggcggc
gggatcgaggaccgggccccggtggcggcagccccgctcgacgtcgtcggtggcgatgag
gccgaggaagaggaacagccgcgccggccccggtcgctgcgccgctacaagatccaggaa
gtcatcaagcgccgccagatcatgctggtgcaggtgacgaaggaagagcgcggcaacaag
ggcgccgccctcaccacttacctttcgctggccggccgctattgcgtgctgatgcccaac
accgcgcgcggcggcggcgtatcgcgcaagatcaccagcgccaacgaccgcaagcgcctc
aagtcggtgatcggcgatctggaaatccccaaggggatggccgtgatcgtgcgcaccgcc
ggcagcgagcgcaaccgcaccgagatcaagcgcgactacgagtatctgctgcggctctgg
ggcgagattcgcgacctgacgctgcgctcgacggcgcccgagctgatctatgaggaagcc
aacctgatcaagcgctcgatccgcgatctctatacgcgcgacatcgaggacattcaggtc
gagggtgacgagggctacaaggccgccaaggccttcatgaagatgctgacgccgagccat
gcgcggcgcgtgatccattatcgcgaccccagcatgccgctgttccagcgccatcaagtc
gagacccagctcgacgcgctgcacaatcccacggtccagctccggtcgggcggctatatc
gtcatcaaccagaccgaagcgctggtggcgatcgacgtcaattccggccgcgccacgcgc
gagcgcaacatcgaagacacggcgctgcgcacgaatatggaggctgccgaagaggtcgcg
cgccagcttcgcctgcgcgatctggccggcctgatcgtcatcgacttcatcgacatggaa
gagcagcgccacaacgcgcaggtcgagcgtcgcctcaaggaggcgatgcgcaccgaccgg
gcgcgcatccagatcgggcgcatcagcccgttcggcctgctcgagctctcgcgccagcgg
ctgcgtccgagcctggtcgaggcctcgaccgagatctgtcgcctctgccgcggcctgggg
cgcgtgcgctcgaccgaatcgaccgcgctccatgtgctgcgcggcgtcgaggaggaaggc
acgcgccgccgcggccccggcatcaccgtctcggtgccgacggcggtcgccctcttcatc
ctcaaccagaagcgccgggccctggccgagatcgagatccgccatggcttccgcgtctat
ctcaccggcgacgatcacctgatcccgccggaataccgcatcgagcgcctgcgggcgctg
gcaccgggcgaagagctgcccatgccggcgacttcgctgccggcaccggcggtcctcgac
gagcccgaagacgagatcgagatcgaggacgaagccgagatcgaagatcgcctcgagccc
gaggacggcgacgtcgccccggccgagccgcgcgaagcgcgcaacgaccgcggcgatcgg
ggcgaccgcggtgatcgcggcgaccgggccgaacaaggcggcgagaatgagcggggcggc
cgccgccgccgccggcgtcgccggggcggtcgcggacgcgacggcgaggacaaccgccgg
gaaggcggtcgcgatggcgacggccagcgccgcgagggcccggtgccggtcgctgccgaa
cggccgatcgaaaaccaaccgcgtcgcagcgaattcgttgccgatgacatgacgcccgcc
gaggccgccgaaggcccgggcaatgccacggcgccgcaaccgcgcgaaggtcaggacgag
gcccaggcgcccggtgcaggcgatgcacgccggcgtcggcgccgtggccggcgcggcggt
cgccggcgttcgcgccgtcgccaggaaggcggcttgccgggtgaagccccggcgccgcag
gtcggtctcgagaacgatcccggggagccccaggaacagccgcgcggcccgcggcccctg
gtgacgccggccgacttcgatcgcgactggccctataacgagccggatgacgagatcgag
gacgccgacggcaatgtcgaagccgaggtgccggaggacgacgccgagctggagaacgag
gaaaccggcgacgagagcgagacgccggtggaatccgctcgcgatcggccccacgaccag
ccggcgcatgggcatgcccatcgcaatcatgaggaggccgcgcctgcggccacccttgtc
gcgccggcagagcctgctcacgcggccgaaagacaggaacagccggcccccagccatcgc
gccgaggaaccggcccgggtcgttctgccggagccgaagagcgagccgcaaccgaccaag
cgcggctggtggcgccgcggctcctaa
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