Hypericibacter terrae: FRZ44_18240
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Entry
FRZ44_18240 CDS
T06396
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
htq
Hypericibacter terrae
Pathway
htq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ44_18240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htq03019
]
FRZ44_18240
Enzymes [BR:
htq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRZ44_18240
Messenger RNA biogenesis [BR:
htq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRZ44_18240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
Utp25_C
NAT10_TcmA_helicase
Flavi_DEAD
ECH_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEX16529
UniProt:
A0A5J6MGJ6
LinkDB
All DBs
Position
1963620..1965095
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AA seq
491 aa
AA seq
DB search
MTDFASLGLAEPLLRAVAQEGYTVPTPIQAQTIPYVMQGRDLLGIAQTGTGKTAAFALPI
LHRLAQNRKAPPQRGCRVLVLAPTRELAAQIAQSFETYGRHFRFSVAVVVGGVKPSPQIR
ALARGVDVLVATPGRLNDHLGTGAARLDGAEVLVLDEADHMLDLGFLEPIRKILRRMPKE
RQTLFFSATMPQAIGSLAKDMLRDPASVAVAPVATTAEKVSQQVFLVERPAKPALLIELL
SKPEFARTLVFTRTKRGADRVTERLEAAGIPAAAIHGNKSQSQRERALLSFRQGRTRILV
ATDIAARGIDVDGITHVVNFDLPEVAEAYVHRIGRTARAGAAGIAISFCDYEERGYLRDI
ERLTRQTLPVTDRRGKVPAGSHEVMARVDGETRGRQGRGLSQPSRGHADNRNHGDNRNRN
DGRGHGDARPHADARARTDGRGYSDGRGQKEGRGHGENRGGPRSARPAGGKNRRPGRPNY
QPNHGRTAIGD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgactgatttcgcttcgctcggcctggccgagcccctcctgcgcgctgttgcccaggaa
ggctataccgtgccgacgccgatccaggcacagaccatcccctatgtcatgcaaggccgc
gacctgctcggcatcgcccagacgggcaccggcaagacggcggcgttcgcgctcccgatc
ctccatcgcctggcccagaaccggaaggcgccgccgcagcgcggctgccgcgtcctggtg
ctggcgcccacccgtgagcttgcggcccagatcgcccagagcttcgagacctatggccgt
catttccgcttctcggtcgcggtcgtcgtcggcggcgtcaagccgagcccgcagatccgt
gcgctcgcgcgcggcgtcgacgtgctcgtcgccacgccgggtcgcctgaacgaccatctc
ggcaccggtgccgcccgtctcgacggcgcggaagtcctggtgctggacgaggccgaccat
atgctcgacctcggcttcctcgagccgatccgcaagatccttcgccgcatgccgaaggaa
cgtcagaccctgttcttctccgcgaccatgccccaggccatcggctcgctggcgaaggac
atgctgcgcgatcccgccagcgtcgccgtcgcccccgtggcgacgaccgcggaaaaggtg
agccagcaggttttcctcgtggagcggcccgccaagccggcgctgctgatcgaattgctg
tccaagccggaattcgcccgtacgctcgtcttcacccgcaccaagcggggtgctgatcgc
gtcacggaacgtctggaagcggccggcattccggcggcggccatccatggcaataagagc
cagagccagcgcgaacgcgccctcctgagcttccgccagggccgcacccgcatcctggtc
gcgaccgacatcgccgcccgcggcatcgatgtcgacggcatcacccatgtggtgaatttc
gatctgccggaagtcgccgaagcctatgtgcatcgcatcggccgcaccgcgcgcgccggc
gctgccggcatcgcgatctcgttctgcgattacgaggagcgcggctatctgcgcgatatc
gaacggctcacacgccagaccctgccggtcaccgaccgtcgcggcaaggtgccggccggc
tcgcatgaggtgatggcgcgcgtcgatggcgagacccggggccgtcagggccgcggtctc
agccagccgtcgcgcggtcacgccgacaaccgcaatcatggcgacaaccgcaaccgcaat
gacggtcgcggccatggcgacgcccgtccccatgccgatgcccgtgcccgcacggacggc
cggggctacagcgacggacgcggccagaaggaaggtcgcggtcatggcgaaaaccgtggc
ggcccgcgctccgcgcgtcccgccggcggcaagaatcgccgcccgggccgaccgaactat
cagcccaatcacggccgtaccgccatcggcgactaa
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