Hydrogenovibrio thermophilus: EPV75_01970
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Entry
EPV75_01970 CDS
T05808
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
htr
Hydrogenovibrio thermophilus
Pathway
htr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EPV75_01970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htr03021
]
EPV75_01970 (rpoC)
03400 DNA repair and recombination proteins [BR:
htr03400
]
EPV75_01970 (rpoC)
Enzymes [BR:
htr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EPV75_01970 (rpoC)
Transcription machinery [BR:
htr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EPV75_01970 (rpoC)
DNA repair and recombination proteins [BR:
htr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EPV75_01970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
ArnB_C
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QAB14517
UniProt:
A0A451G4V4
LinkDB
All DBs
Position
436374..440588
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLGFLKKQNVSNEFDTIKVTLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIRDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIDLATSVAHIWFLKSL
PSRIGLMLDMTLKEIEAVLYFEAFMVVDPGLTPLEPWQLLSEEEYLDAMDEYGDEFEAQM
GAEAIKKMLQSIDLDAEATRLREEMDATSSETKQKKISKRLKLIDSFIQSGNKPEWMILD
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPDIIVRNEKRMLQ
ESVDSMLDNGRRGRAVTGTNKRQLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPS
LRLHQCGLPKKMALELFKPFIFSKLQKRGLATTIKAAKKMVEQGLPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAINLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSTNNLLSPANGDPIIVPSQDVVLGLYYITRESVNAIGEGKAFSNWMEVQRALEAD
AVHVHTKIKLKVEETVIDDAGVESVKKGLIDTTAGRALLLSILPKGLSFDLLNLNLTKKN
ISKALNTCYRLLGPKETVIFADQLMYAGFKWSTLAGLSFCSDDMLIPDDKASIIERADDQ
VAEIQKQFAQGLVTEGERYNKVVDIWSHTNELVTKSMMDELQFETVKDAEGKDVQQTSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEADCGTEAGIIMTPHVEGGEVVEELKERIL
GRVVAEDVVGMDGNVIVENGTLLDERLVKLIDESGVDSVKVRSPITCETKFGICQKCYGR
DLARGHMVNLGEAVGVMAAQSIGEPGTQLTMRTFHIGGTASASTAQSQVEVKHEGKVKFD
NLKTVQNSEKQVVVTSRSGEISILDSMGREKERYKIPYGSVLNVEDGADASSGKVLATWD
AHTHPVITEAEGVIQFGNFEGAVEEHTDELTGLTTHVVKSAKERSSASKEVRPYIQLVDD
AGEVVPFPGTQTPAIYYLPENSIVVVNQADKVGAGDILARIPQESSKTKDITGGLPRVAD
LFEARVPKEPAIMAEVSGVVGFGKETKGKQRLVITQDSGEQHETLIPKWRSVDVFEGERV
EKGDVIVDGNPNPHDILRLLGVEQLTKYIVDEVQDVYRLQGVRINDKHIETVVRQMLRKV
EIRTSGDTGLIKGEQAEFARVLELNESAMTEGNVEASFQRVLLGITKASLATESFISAAS
FQETTRVLTEAAVSGKEDKLVGLKENVIVGRLIPAGTGFAYHQARRAANEKTQQELTAFM
DAQDDEAVQPEMVDEESSVTEVSE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgttaggattcctgaaaaaacaaaatgtatcgaacgagttcgatacgatt
aaagttacacttgcttcaccggaaaagattcgttcttggtcttatggcgaagtcaaaaag
ccggaaaccatcaactaccgtacattcaagccggaaagagacgggcttttctgtgccaag
atttttggcccgattcgtgattacgaatgcttgtgcggtaaatataagcgtttgaagcat
cgcggtgttatttgtgagaagtgtggtgttgaagtcacgcaatccaaagtgcgtcgtgag
cgtatggggcacatcgatttggcgacttccgttgctcatatctggttcttgaagtcattg
ccatcccgcatcggtttgatgttggacatgacattgaaagaaattgaagcggtgttgtat
tttgaagcattcatggttgtggatcctggtttgacgccattggaaccatggcagcttttg
agcgaagaagaatacctggacgctatggatgagtatggcgatgagtttgaagcgcaaatg
ggtgcggaagccattaagaaaatgcttcagtccatcgatttggatgccgaggcgactcgc
ctgcgtgaagaaatggatgctaccagctctgaaaccaaacagaaaaagatttcgaagcgt
ttgaagttgatcgattccttcattcaatccggcaataagcctgagtggatgattctggac
gtgctgcctgtattgccgccagagttgagaccgttggtacctttggacggtggtcgtttc
gcgacttccgacttgaatgacttgtaccgtcgtgtgattaaccgtaataaccgtttgaag
cgtctgttggatttgatggcgccggacattatcgttcgtaacgaaaaacgtatgcttcaa
gaatcggttgattctatgttggataacggtcgtcgcggtcgtgcggtaaccggtacgaat
aagcgccagttgaagtctttggccgacatgatcaaagggaaacaagggcgtttccgtcaa
aacctgcttggtaagcgtgttgactattccggtcgttcggtcatcgttgttgggccgtct
ttgcgtctgcatcagtgtggtctaccgaagaaaatggcgttggaactgttcaagccattt
attttcagtaaattgcaaaaacgtggtctggcaacgactatcaaagcggctaagaaaatg
gtggaacaaggtttgccggaagtttgggatgttctggacgaagtcattcgcgaacacccg
gttctgctgaaccgtgctccaacgctgcatagattggggattcaggctttcgaaccggtt
ttgattgaaggtaaagcgattaacttgcacccattggtgtgttccgcctttaacgccgac
ttcgatggtgaccaaatggccgtgcacgtaccattgtctttggaagctcagttggaagcg
cgtacattgatgatgtcaacgaataacttgctgtcacctgccaacggtgacccgattatt
gtgccatcacaggacgttgtattgggcttgtattacattacccgtgaaagcgtgaatgcg
attggcgaagggaaagctttctccaactggatggaagttcaaagagcgcttgaagcggat
gccgttcacgtgcataccaaaatcaaactgaaggtggaagaaactgtcattgatgatgcc
ggtgtcgagtcagtgaaaaaaggcttgattgacactacggcgggccgtgcgttgctgctc
agcattctaccgaagggattaagttttgacttgttgaacttaaacctgacgaaaaagaat
atctcgaaagcactgaatacttgctaccgtttgttgggaccgaaggaaaccgttatcttc
gctgaccaattgatgtatgccggtttcaaatggtcaactttggcgggtctgtcgttctgt
tcggatgatatgttgattccggatgataaggcttcgattatcgaacgcgctgacgatcag
gtcgcggaaattcaaaagcagttcgcacaaggtttggtcaccgaaggtgaacgttacaac
aaggttgttgatatttggtcgcatacgaatgagttggtcaccaagtcgatgatggatgag
ttgcagttcgaaacggtaaaagatgcggaaggtaaggatgttcagcaaacttcctttaac
tccgtctatatgatggcggactccggggcgcgtggttccgttgctcagatgcgtcagttg
ggaggtatgcgtggcttgatggcgaagccggatggttcgatcatcgaaacaccgattacg
gccaacttccgcgaaggcctgaacgttctgcaatactttatttcgacacacggtgcacgt
aaaggtttggccgataccgctctgaaaaccgcgaactcgggttatttgacacgacgcttg
gtggatgttgcccaggatgtggtagtgaccgaagcggactgtggaaccgaggcgggtatc
atcatgacgccgcatgttgaaggtggtgaagtcgttgaggaattgaaagaacgtattctt
gggcgcgtggtcgccgaagacgtggttggcatggacggcaatgtgattgtcgagaatggt
actttgttggatgaacgcctagtcaagttgattgacgagtcaggtgtggattctgtaaaa
gtccgttccccaattacctgtgaaaccaaatttggtatttgtcaaaaatgttatggacgt
gatttggccagagggcatatggtgaacctgggtgaagcggttggtgttatggctgcacag
tccatcggtgaaccgggcactcagttgaccatgcgtactttccatatcggtggtaccgca
tcggcgtctacggctcagagccaggttgaggtcaagcacgaaggtaaggtgaagtttgat
aacctgaaaaccgtgcaaaactcagagaaacaagtggtggtcacgtcacgttccggcgaa
atctccattttggattccatggggcgtgaaaaagagcgctataaaattccatatggttct
gtactgaacgtggaagatggtgcagatgcgtcttctggaaaagtattggcgacttgggat
gcgcatacgcatccggtcatcacggaagcagaaggtgtgattcaatttgggaactttgaa
ggcgccgttgaagagcataccgacgagttgaccggtttgaccacgcacgttgttaagagt
gctaaggaaagatcttcagccagcaaagaagtcagaccgtatattcagttggttgatgat
gccggtgaggttgtgcctttcccgggaacgcaaaccccagctatctattatttgccagaa
aactcgattgtggtagtgaatcaagcggataaagtgggtgccggtgatattttggccaga
attccacaggaatcctccaagacaaaagacatcacgggtggtctgcctcgcgttgccgat
ttgttcgaagcgcgtgtgccgaaagagccagccattatggcggaggtttccggtgtagtt
ggtttcggtaaggaaactaaaggtaagcaacgcttggtcattacgcaagacagtggcgag
cagcatgaaacgttgattccgaaatggcgttcagtcgatgtatttgaaggtgagcgtgtt
gaaaaaggtgatgtcattgttgacggtaatccaaatcctcacgacattcttcgattactt
ggtgttgaacagttgacgaagtatatcgttgatgaagtgcaggacgtttatcgtctgcaa
ggtgttcgcatcaatgacaagcatatcgaaacggttgttcgtcaaatgctgcgcaaagtt
gagatcagaacatcgggtgataccggtttgatcaaaggtgagcaggctgagtttgcaaga
gtgctcgagttgaatgaatcggcgatgactgaaggaaatgtagaagccagtttccaacgt
gtattgttgggtattacgaaggcttctttggcgacggaatcttttatttcggccgcttct
ttccaagagacgacgcgcgttctgaccgaggccgctgtcagcggtaaggaagataagctg
gtcggcttgaaagaaaacgttattgttggtcgattgatccctgcgggtacgggctttgcc
tatcaccaggctcgaagagcggctaatgaaaaaacgcaacaagagttgacggctttcatg
gatgcccaggatgatgaagcggtgcaaccagagatggttgacgaagaatcgtctgtaaca
gaagtgtcggaataa
DBGET
integrated database retrieval system
