Hydrogenovibrio thermophilus: EPV75_04445
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Entry
EPV75_04445 CDS
T05808
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
htr
Hydrogenovibrio thermophilus
Pathway
htr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPV75_04445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htr03019
]
EPV75_04445
Enzymes [BR:
htr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EPV75_04445
Messenger RNA biogenesis [BR:
htr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EPV75_04445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AppA_4HB
Gag_p24
Sacchrp_dh_NADP
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
QAB14973
UniProt:
A0A410H230
LinkDB
All DBs
Position
complement(963734..965116)
Genome browser
AA seq
460 aa
AA seq
DB search
MSFNALGLSAPILDAIQQQGYETPSPIQQQAIPVVLEGRDVMAAAQTGTGKTAGFTLPIL
ERLSKGPSPKANQARALILTPTRELAAQVADSVATYGQHLPLKSTVVFGGVKINPQMMRL
RGGVDILIATPGRLLDLHSQNAVKFDQLEILVLDEADRMLDMGFIHDLKRIARLLPKDRQ
NLLFSATFSDEIRKLAQSFVTNPVEISVTPRNSTAETVTQQVYPVDKNRKSALLVHLIQE
HKWFQVLVFSRTKHGANRLTRQLETKGIRAAAIHGNKSQAARTRALSEFKDGKIQVLVAT
DIAARGLDIDQLPQVINFDLPNVAEDYVHRIGRTGRAGATGQAISLVSADEIKQLSDIEN
LIQKQIPRHIEDGFEPETDLPETRLNHRPKKPKKPKKPKKPNAPQGQTANEGATNDTPSN
KKPAPSRRRKPASNRKPSQNRSGQNPSGKRPNRSPKNTQH
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaacgcccttggtttatccgcccccattcttgacgccattcaacagcaaggc
tatgaaacgccctccccgattcagcagcaagccatccctgtcgtactggagggccgcgac
gtcatggccgccgcccaaaccggcaccggcaaaaccgccggctttacgttgccgatattg
gaacgcttatcaaaagggccgtctcctaaagccaaccaagcgcgcgctttgattctgacc
cccacacgtgaactggcggcacaagtcgccgacagcgtggccacttacggccaacattta
ccgctcaaatccaccgtggtattcggcggcgtcaaaatcaatccgcaaatgatgcgcctg
cgcggtggcgtggacattctgattgccacgcccggccgtctgctcgacttgcacagccaa
aacgccgtcaaattcgatcaattggaaatactggtattggatgaagccgaccggatgctc
gacatgggcttcattcacgacttgaaacggattgcacgtctgttaccgaaagaccgtcag
aacctattattctccgccactttctccgatgagattcggaagctggcgcaaagcttcgtt
accaacccggtggaaatttctgtcacaccccgcaactccaccgccgaaaccgtcacccaa
caagtttacccagtcgataaaaaccgtaaatccgctctgctggttcatttaattcaagaa
cataagtggtttcaagtattggtcttctcgcgcaccaaacacggtgcgaaccgcttaact
cgtcagctggaaaccaaaggcatccgcgccgctgccattcacggcaacaaaagccaggcc
gcccgaacacgcgccttgagcgagttcaaagacggcaagattcaggtactggtcgccacc
gacatcgccgcacgcgggctggacatcgatcaattgccgcaagtgatcaatttcgacctg
cccaatgtggccgaagactacgttcaccgcattgggcgtaccggacgcgccggcgcgacc
gggcaagccatttcactggtcagcgccgacgaaatcaaacaactctccgacatcgaaaac
ctgattcaaaaacaaattccacgtcatattgaagacggttttgaacccgaaaccgacttg
ccggaaacccgtttgaaccaccgtccgaaaaagccaaaaaaaccgaagaagcccaaaaaa
cccaacgctcctcaaggccaaacagcgaatgaaggtgctacaaacgacaccccatccaac
aaaaaaccggcgccttcccgaagacgcaaacccgcgtccaaccgtaagccgtctcaaaat
cgttccggccaaaacccatccggaaaacggccaaaccgttcccccaaaaacacccagcat
tga
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