Hydrogenovibrio thermophilus: EPV75_05370
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Entry
EPV75_05370 CDS
T05808
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
htr
Hydrogenovibrio thermophilus
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htr03019
]
EPV75_05370 (hrpA)
Enzymes [BR:
htr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EPV75_05370 (hrpA)
Messenger RNA biogenesis [BR:
htr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EPV75_05370 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
ResIII
AAA_16
AAA_23
Cullin_Nedd8
T2SSE
ABC_tran
SRP54
AAA_25
RsgA_GTPase
AAA_7
Pesticin
Motif
Other DBs
NCBI-ProteinID:
QAB15138
UniProt:
A0A410H2H1
LinkDB
All DBs
Position
1156085..1160086
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AA seq
1333 aa
AA seq
DB search
MADSIQFNDKPSIIKALEQTLSKDRFALKRQFERFKLDSDADVEALQDDSAWQKFQARLT
ASVQAVAANRQAVPQITYGTLPVAERREEIRNLIQNHQVVVIAGETGSGKTTQIPKICLE
AGRGIFGRIGCTQPRRLAARSVAERIAEELGSKLGELVGYQVRFHDQVHQQSLLKVMTDG
ILLAEVQNDPFLNQYDTIIIDEAHERSINIDFLLGILKKLLPKRPDLKLIITSATIDTER
FAQFFEGAPIIEVSGRTYPVEVRYNPLVKIEDDDGNEFEQDIPTAIGYALEELAEIDPFG
DVLVFQVGERDIKETAEYLRKQHLKNTEIVPLYARLSMAEQNKVFQLSQKRRVILSTNVA
ETSLTVPGIKFVIDPGLVRISRYSVRSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRL
YDEDDFNSRSAFTPPEIHRTSLATVILQMTQMKLGAVKHFPFIEPPEDKAVNDGYRQLHE
IGALDENRRLTDSGRQLAKLPLDPRMAKMVLEGQKNGVLAEVLVIASAISIQDPRDMNEA
NRQAANQAHKPFEDPRSDFLFFLNLWRFYEDKRRHLSQNKLRKLCKTNFLSYLRMKEWHD
LFFQLEMSLKRIGVKVGDLHLYEEVKQGKTVTERLSDMHSMAVHRSLMAGLLGNIAMRDD
ENTYLGARNTKLFIHPSSVLFKRKPKWMLSGELVETSKLYARNNALIDINWVEALAPHLV
KRSYTDPHWQKKAGQVGAFESVTLYGLPIVNRRRCNYGPINPKEAHKIFLRHALVEGEMH
SRVAFLAHNRRLIDEIHDIESKLRRPDFLVEEDVLYEFYQARIPEHIYSQPAFEKWVKKT
EQQAPETIDALKLTRDFLLKQSVDAGLAVEYPDQVQVKNQLELDVDYHFEPGKQQDGLVV
KVPLSALNLVQKSDFDWLTPGLLKEKTAFYIKALPKQLRKQFIPAPQTAEVVLQEMSPTK
KLDGQSADYVTQLVWALNRRGQQKVASADFENAGLPEALPEHLQPYFVLQDDKGKTIAEK
ADLEALKTEYQHLVDDRIQKHQAKTATDSQRVEEWNFGDLAPSQTIRAKGVEMVAYPALR
CRPEAEGDIIELDLVGDEETALAEHGEAVRTLLALNLPDKVKYLQKKLPMQKACLCYAPY
GTCDALTQQVIDRALRQLVPEPETIRTQAAYEQTLETVRSKWIETAQGIAKQVNDILTGH
QKIAKQVKGKVNPRWLASVADIRAQLDALIDKDFVRTTPETWFRQMPRYLQGLEKRLEKI
DIDPTKDQKAIREMQPVLEAYERLAQDAAYRNHPGLVEMRWLLEELRLSLFAQPMKTVKP
VSVQRLLKQLKNL
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccatccaattcaacgataaaccgtcgattatcaaggcgcttgagcaaacc
ttgtcgaaagaccggtttgccttgaagcggcaattcgaacgcttcaaactcgattcggac
gcggatgtcgaggcgttgcaggatgattcggcctggcaaaaatttcaggcccgtttgacg
gcgtcggtgcaggcggtggccgccaaccggcaagcggtgccgcaaatcacctatggcacc
ttgccggtggcggaacgccgtgaggagattcggaatctcattcaaaaccaccaagtggtg
gtgattgccggggaaaccgggtcggggaaaaccacccagattccgaaaatctgtctggaa
gcggggcgcggtattttcggccgaatcggctgtactcagccgagacgtttggcagcgcgc
agcgtggcggaacggattgccgaagaactcggctccaaactgggcgagttggtcgggtat
caggtgcggtttcacgaccaggtgcatcaacaaagtttgttgaaggtgatgaccgacggg
attctactggcggaagtccagaacgacccgtttttgaatcagtacgacaccatcatcatc
gatgaagcgcatgagcggtccatcaacatcgatttcttgctcggtattttgaaaaaactg
ctgccgaagcgcccggatttgaaactcatcatcacgtccgccaccatcgacaccgaacgt
tttgcgcaattttttgagggtgcgccgattatcgaagtcagcgggcggacctatccggtg
gaggtccgctacaaccctttggtgaaaatcgaagacgacgacggcaatgaattcgaacag
gacattcccaccgccatcggttatgcgttggaagaattggcggaaattgacccgttcggg
gatgtgctggtgtttcaggtcggtgaacgcgacatcaaggaaactgcggaatacctgcgc
aaacagcatttgaaaaacaccgaaatcgtgcccttgtacgcgcgtttgagcatggcagag
cagaacaaggtatttcaattgtcgcagaagcggcgggtgattttatcgaccaatgtagcg
gaaacgtccttgacggtgccgggcatcaagttcgtgattgacccaggcctggtcagaatc
agccgttattcggtgcgctccaaggtgcagcgtttgccgattgagaaaatctcccaggcc
tcggccaatcaacgggccgggcgttgcggccgtgtcagttccggggtgtgcatccgtttg
tacgatgaagacgatttcaacagtcgttcggcttttacgccgccggaaatccaccgcact
tcactcgccacggtgattttgcagatgacgcaaatgaagctgggcgcggtgaaacatttt
ccgtttatcgaaccgccggaagacaaggcggtgaatgacggttatcgtcaattgcacgaa
atcggcgcgttggacgaaaaccgccgcttgaccgacagtggccgccagctggccaaactg
ccgctggacccacggatggcgaagatggtgctggaagggcagaagaacggtgttttggcc
gaagtgctggtgattgcctcggccatcagcattcaagacccgcgcgatatgaatgaagcc
aatcgtcaggccgccaaccaagcgcataaaccctttgaagacccgcgttccgacttcctg
tttttcctcaatctgtggcgtttttacgaagataaacgccgtcatttgagtcaaaacaaa
ctgcgcaaactctgcaaaaccaatttcctgtcctatctgcgaatgaaagaatggcacgac
ttgtttttccagttggagatgagtttgaaacgcatcggtgtgaaagtcggcgatctgcac
ctgtatgaagaagtgaagcagggcaagacggtcaccgaacgtttgtcggacatgcattcg
atggcggtgcaccgttctttgatggccgggttgttgggcaatatcgccatgcgcgacgac
gaaaatacctatttgggcgcgcgtaacaccaaattgtttatccacccgagttcggtgttg
ttcaagcgcaaaccgaaatggatgctgtccggcgagctggtggaaacctcgaagctctat
gcccgtaacaatgccctcattgacatcaactgggtggaagcgctggcgccgcacttggtc
aaacgcagttacaccgatccgcattggcagaaaaaggccgggcaagtcggtgcctttgaa
tcagtgacgttatacgggttgccgattgtgaaccgacgacgctgcaattacgggccgatt
aatcccaaagaagcccataaaattttcctgcgtcacgcgctggtggaaggggaaatgcac
agccgggtggcgtttctggcgcataaccgtcgtttgattgacgagattcacgacatcgaa
tccaagttgcggcgccccgattttctggtggaagaggatgtgctgtatgaattctatcag
gcgcggattcccgaacacatttacagccaaccggcgtttgaaaaatgggtcaagaaaacc
gaacagcaggccccggaaaccattgacgctttgaaactgacgcgtgattttctgctcaaa
cagtcggtggacgccgggttggcggtggaataccccgaccaggtccaggtcaagaatcaa
ctggaacttgatgtcgattaccattttgaaccgggcaagcagcaagatggcttggtggtg
aaagtgccgttatcggcgttgaacctagtgcaaaagtccgatttcgattggctgacgccg
ggtctcttgaaagaaaaaaccgctttctacatcaaggccttgccgaaacaacttcgaaaa
cagtttattccggcgccgcagaccgcagaagtggtattgcaggaaatgtcaccgacgaaa
aagctggacgggcaatcggcggattacgtcactcagttggtgtgggcgctgaatcgtcgt
ggtcagcagaaggtggcgagcgcggattttgaaaacgccggtctgccggaggccttgccg
gaacatctgcaaccctatttcgtcttgcaggacgataagggcaaaaccattgccgagaag
gccgatctggaagccctgaaaaccgagtatcaacatctggtggacgaccgcattcagaaa
catcaggccaaaaccgcgaccgacagtcaaagggtggaggaatggaactttggcgatttg
gcaccttcccagaccattcgcgctaaaggcgtggaaatggtcgcgtatcccgctttgcgt
tgccggccggaggcggaaggtgacatcatcgaactggatttggtcggggatgaggaaacg
gcattggccgagcatggtgaagcggtgcggaccttgttggcgttgaatctgccggataag
gtcaagtatttgcagaagaagttgccgatgcaaaaagcctgcttatgctatgcgccttac
gggacgtgcgacgccctaacgcaacaggtcatcgaccgcgccttgcgtcaattggtgccg
gaaccggaaaccatccgcacccaggcggcttacgagcagacgctggaaacggtgcgttcg
aaatggattgaaaccgcgcagggcattgccaaacaggttaacgatattctcaccggacat
cagaaaatcgccaagcaggtcaaaggtaaggtgaacccgcgttggctggcgtccgtggcg
gacatccgtgctcagttggatgccttgattgataaagacttcgtgcgaaccacgccggaa
acctggttccgtcagatgccgcggtatttacaagggctggaaaaacgtttagaaaaaatc
gatatcgacccgaccaaagaccaaaaggccatccgggaaatgcaaccggtgttggaagcc
tatgaacgtctggcgcaggatgccgcctatcgaaatcacccaggcctggtggaaatgcgt
tggctgctggaagaattgcgcttatccttgtttgcccaaccgatgaaaaccgtcaagccg
gtatcggtgcaacgtttattgaaacaactgaaaaacctataa
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