Hymenobacter taeanensis: HMJ29_00940
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Entry
HMJ29_00940 CDS
T08050
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMJ29_00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hts03019
]
HMJ29_00940
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMJ29_00940
Messenger RNA biogenesis [BR:
hts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMJ29_00940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
Cas3-like_C_2
AAA_19
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QJX49128
UniProt:
A0A6M6BMR1
LinkDB
All DBs
Position
214721..216328
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AA seq
535 aa
AA seq
DB search
MNYQNATPIQEQAIPKILEGKDLIACAQTGTGKTAAYLLPLLDKISHAKHGNTSTLILVP
TRELATQIDEQVTGFGYFVEASSIAIYGGGKSEGWEQQKRALTSGADIIIATPGRLIAHL
QMGYVKFDQIKYLVLDEADKMMDMGFSDDILNIVRQLPKERQTLLFSATMPNKIREFSQQ
ILKSPDEIRLAVSKPAAGIDQQFYMAFDRQKIYLLEHIIKTQDVQSMVLFTSQKAAVGGI
VRAINKLGYDARGISSDRTQEEREQIMREFKNKQFPILVATDVLSRGIDIDSLSHVVNYD
IPRAAEDYVHRIGRTARAATKGTAITFISDQDQDRVVKIEQLIERELEKKNITEELGLGE
APEFDPKRFAGLRGKVGGRPERGGRSGGGNRDRGPRPEGGGRGGRDGNRPARAGAPDPKD
PKHQERIAKAQAALAALDAGQAPAVPYQRPPREDHPEGSESRPRREPRAPRPEGEACPPR
APRPPRAEGEATEPRAEGEKSEGQRRRKRGGRGRGPRPEGSTPTPEAAASAPSAE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccagaatgccacgcccattcaggagcaggccattcccaaaatcctcgaaggc
aaagacctcatcgcctgcgcccaaaccggcaccggcaaaacggccgcttacctgctgccc
ctcctcgacaagatttcgcacgccaagcacggcaatacctctaccctcattctggtgccc
acgcgcgagctggccacccagattgacgagcaggtaacgggcttcggctacttcgtggag
gccagcagcatcgccatttacggtggcggcaaaagcgaaggctgggagcagcaaaagcgc
gccctcacctccggtgccgatatcatcattgccacgccgggccgcctgattgctcacctg
caaatgggctacgtgaagttcgatcagattaagtatctggtgctcgacgaagctgacaaa
atgatggacatgggcttctccgacgatatcctgaatatcgtgcgccagctgcccaaggag
cgccagaccttgctgttctcggccaccatgcccaacaaaatccgggagttctcgcagcag
attttgaagagccccgacgaaattcggttggccgtttccaagcccgctgccggcatcgac
cagcagttttacatggcgtttgaccgccagaagatctacctgctggagcacatcatcaaa
acccaggatgtgcagagcatggtgctgtttacgagccagaaagcggccgtgggcggtatt
gtgcgcgccattaataagctgggctacgatgctcggggaatttcctcggaccgcacgcag
gaggagcgcgagcaaatcatgcgcgagttcaagaacaagcaattccccattctggtggca
actgacgtgctgagccgcggcattgacatcgacagcctctcgcacgtggtaaactacgac
atcccgcgcgccgccgaggattacgtgcaccgcattggccgtacggcccgcgccgctacc
aaaggcaccgccatcaccttcatctccgaccaagaccaggaccgggtggtgaagattgag
cagctgattgagcgcgagctggagaaaaagaatatcaccgaagagctaggcctgggcgaa
gctccggagtttgaccccaagcgctttgctggcctgcgcggcaaagtaggcggtcggccg
gagcgtggcggtcgttcaggtggcggtaaccgcgaccgtggcccccgccccgaaggtggt
ggccgcggcggccgtgatggcaaccgccccgcccgcgccggtgcccccgaccccaaagac
cccaagcaccaagagcggattgccaaagcccaagcggccttagccgccctcgatgccggc
caggccccagccgtaccttaccagcgcccaccccgcgaagaccaccctgaggggagcgag
agccgcccccgccgggagccccgcgcgcctcgtccggaaggcgaagcttgtccgcctcgg
gcacctcgcccaccacgcgctgaaggcgaagccacagagccacgggccgaaggtgaaaag
agcgaaggccagcgccgtcgcaagcgcggcggccgcggccgtggtccacgccccgaaggc
tcgaccccaacccctgaagctgctgcttcagcgccgagcgccgagtag
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