Hymenobacter taeanensis: HMJ29_02790
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Entry
HMJ29_02790 CDS
T08050
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03030
DNA replication
hts03430
Mismatch repair
hts03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMJ29_02790 (dnaE)
03430 Mismatch repair
HMJ29_02790 (dnaE)
03440 Homologous recombination
HMJ29_02790 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hts03032
]
HMJ29_02790 (dnaE)
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_02790 (dnaE)
Enzymes [BR:
hts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMJ29_02790 (dnaE)
DNA replication proteins [BR:
hts03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMJ29_02790 (dnaE)
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMJ29_02790 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QJX45920
UniProt:
A0A6M6BDA8
LinkDB
All DBs
Position
660318..664001
Genome browser
AA seq
1227 aa
AA seq
DB search
MPVFSHLHSHTQYSLLDGQASIGALMKKAQADGMPAVALTDHGNMFGAFNFVAEANKYNV
KPIVGCEFYMVEDRHKKAFSREKGERDKRYHQLLLAKDQAGYHNLAKLCSMSFIEGVYSK
FPRIDKEILLKYHEGLIATSCCIGAEIPQAILFESEAKAEELLKWWLDVFEDDYYIEIQR
HGLMNFDGTGKSQEDVNQVLLGLAKKYNVKVICTNDSHYVDQTDFAPHDILLCVNTGEEH
SIPVGDFQTQYFRLISQDNKVLYDHLDNLRPLSGQDASIRRQLQRIDEEAQSPKPRARFG
FANDQFYFKTQEEMNALFADVPESVDNTNEIVDKITPPKLQRDILLPNFPLPPEHPTADA
FLRHLTFKGAFEGPKARYSERTPEIEERLDYELRVIETMGFAGYFLITQDFINHGRNIGV
AVGPGRGSAAGSAVAYCIGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQRVID
YVVDKYGKTQVAQIITFGTMAAKSSIKDVSRAMDLPLPVANDLVKMVPDQVGTTLQKAFA
ENQELDMIRRDDAPDNLRGQILRLAEKLEGSVRNTGIHAAGVIIAPDDITKYIPVSTSKD
SDLLVTQFDGKVIESAGMLKMDFLGLKTLTIIVDAINLIEKNHGVKIDIDAIPIDDQKTY
ELYQRGDTIGTFQFESEGMRMYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKHGKE
PVEYPHELLEPILNYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMALER
EKFCEGAEKLHGIKPKKANEVFDVMEKFAAYGFNRSHSAAYSVVAYQTGYLKAHYPAEYM
AAVLTNNMGDIKKVTFFIEEARKQGVAVLGPDVNESILKFNVNSQGQIRFGMAAVKGAGE
AAVEEIVQERDKNGPYSDIFDFSRRVNLRAVNKKTFESLAQAGAFDSFERYHRRQYIEAP
SNDQNVIEKAMRVGQQHQAAKESAQQSLFGGGGDMMAIPMPKIVDMEPWSPTEKLRREKE
VVGFYLSGHPLDDFKLEIDSYCTCGLDKVENYKNRDVTVAGLISNVLFKTTKTGQPFVSF
NIEDYESSLNLALFRDDYSKFSALINPRNYDKEQVPPMFIRGKYAQRFRDSDQFEFKILT
MEPLFNVAEKLANGVRVQLDLRTITEPFMDRFMEAVEGCAGSKKLEIKFAEPHEHLAVDT
YSRRYRIEPKEFIRKMREMEIDACQLI
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcttctcacatcttcactctcacacgcaatattcccttcttgatggccaggcc
agcatcggcgccctcatgaaaaaggcccaggccgatgggatgcctgccgttgctctcacc
gaccacggtaatatgttcggggcgttcaactttgtagcggaagccaacaaatataacgtg
aagcccattgtagggtgcgagttctatatggtggaagaccggcacaaaaaggccttcagc
cgcgagaagggcgagcgggacaagcgctaccaccagcttctgctggccaaagaccaggcc
ggctaccacaacttggccaagctttgctccatgagctttatcgaaggggtgtactccaaa
ttcccccgcatcgataaggagatactactcaagtatcatgaaggactgattgctacctcc
tgctgcattggtgctgagattccgcaggctattctgtttgagagcgaggccaaagccgaa
gagttgctgaagtggtggctggatgtgtttgaggacgactactacatcgagattcagcgc
cacgggctgatgaactttgatggcacgggcaagagccaggaagacgtaaaccaggtgctg
ctaggcctggccaagaaatacaacgtgaaggttatctgcaccaacgactcgcactacgtt
gaccagaccgacttcgccccccatgatattctgctctgcgtgaacaccggggaagagcac
agcatcccggttggtgacttccagacgcagtatttccgcctgatttcccaggacaacaag
gtactctacgaccacctcgataacctgcgtcccctgtcgggtcaggatgccagcatccgg
cggcagctgcagcgcattgatgaggaagcgcaaagccccaagccgcgggcccgcttcggc
tttgccaacgaccagttctacttcaagacccaggaggagatgaacgcgctgttcgccgat
gtgccagaaagcgtggacaacaccaacgagattgtagataagatcacgccgcccaagctg
cagcgtgatattctacttcccaactttcccctccctcccgagcaccccaccgccgacgcc
ttcctgcgtcaccttaccttcaaaggcgccttcgaggggcctaaagcccggtactcggag
cggacgcccgagattgaggagcgcctcgactacgagttgcgcgtgattgaaaccatgggc
ttcgcggggtacttcctcatcacccaggactttattaaccacggccgcaacattggcgtg
gccgtaggcccgggccggggctcggcggcgggctcggcagtggcctactgcattggtatc
accaacattgacccgattaagtactcgctgctgtttgagcgcttcctgaatccggagcgg
gtgtccatgcccgatattgatattgacttcgacgacgtgaaccgtcagcgggtaattgac
tacgtagtagataagtacggcaagacccaggtagcccagattattacctttggtaccatg
gccgccaagtccagcatcaaggacgtgtcgcgggccatggacttgcccctgccggtagcc
aacgacctggtgaagatggtgcccgatcaggtaggtactacgctgcagaaagccttcgcg
gagaatcaggagctggacatgatccggcgcgatgatgcacccgacaacctgcgcggccag
atcctgcgcctcgccgagaagctggaaggctcggtgcgcaacacgggtatccacgcggcc
ggtgttattatcgctcccgacgatattaccaagtacatccccgtttccacgtccaaggac
tcggacctgctcgttacgcagttcgacggcaaagtaattgagtcggcggggatgctgaag
atggacttcctggggttgaaaacgctcacgattatcgtggacgccataaacctcattgag
aagaaccacggcgtcaaaatcgatattgacgctattccgattgacgaccagaaaacctac
gagctctaccagcgcggagacacgattggtacgttccagtttgaatcggagggcatgcgc
atgtacctcaaggacctcaagcccaccaacattgaggacctgattgccatgaacgccctg
taccgcccgggcccgatgcagttcatcccgaacttcattaaccgcaagcacggcaaggag
ccggtagaatacccacatgagctgctggagcccatcctgaactactcccagggcattatg
gtgtaccaggagcagatcatgcagacggcccagattctggccggctactccctcggtggc
gccgacctgctgcgccgggctatgggtaagaaggacatgaagaagatggccctggagcgg
gagaaattctgcgaaggcgccgagaagctgcacggcatcaagcccaagaaggccaacgag
gtgttcgacgtgatggagaagtttgcggcctacggcttcaaccgctcccactccgccgcc
tactcggtagtggcctaccagaccggctacctcaaggcccactaccccgccgagtacatg
gccgccgtgctcaccaacaacatgggcgacatcaagaaggtgacgttctttattgaggaa
gcccgcaagcaaggcgtggccgtactaggccccgacgtgaatgaatccatcctgaagttc
aatgtgaacagccagggtcagattcgtttcgggatggcggccgtgaagggcgccggtgaa
gcggccgtggaggagattgtgcaggaacgcgataaaaacggcccctattccgatattttc
gacttctcacgccgcgtgaacttacgcgccgtgaacaaaaagaccttcgagagcctggcc
caggccggtgccttcgactcgtttgagcgctaccaccgtcgccagtacattgaggcgccc
tccaatgaccagaacgttattgagaaggccatgcgcgtaggccagcagcaccaggccgcc
aaagagtcggcgcagcagagcctctttggcggcggcggtgatatgatggccatccccatg
cccaagattgtggacatggagccctggagccccaccgagaagttgcgccgcgagaaagag
gtagttggcttctacctgtcaggccacccgctcgatgacttcaagctggaaattgactcg
tactgcacctgtggcctagataaggtggagaactacaagaaccgcgacgtaacggtggcc
ggcttgatttcaaacgtgctgttcaagaccaccaaaacgggtcagccattcgtgagcttt
aacattgaagactacgaatcaagcctgaacctggccctcttccgcgacgactactccaag
ttctcggccctgattaacccgcgtaactacgataaggagcaggtgccgcccatgttcatc
cggggcaaatacgcccagcgcttccgcgactcagaccagtttgagtttaagattctgact
atggagcccctgtttaacgtggctgaaaagctggccaacggggtgcgggtgcaactagac
ctgcgcaccatcacggagccgttcatggaccgctttatggaagccgtggaaggctgcgca
ggctctaagaagctggaaattaagtttgcggagccccatgagcatctggccgtagacacc
tactcgcgccggtaccgcattgagccgaaagagtttattcggaagatgcgcgaaatggaa
attgacgcctgccagctgatttaa
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