Hymenobacter taeanensis: HMJ29_04040
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Entry
HMJ29_04040 CDS
T08050
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMJ29_04040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hts03021
]
HMJ29_04040 (rpoC)
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_04040 (rpoC)
Enzymes [BR:
hts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMJ29_04040 (rpoC)
Transcription machinery [BR:
hts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMJ29_04040 (rpoC)
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMJ29_04040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QJX46153
UniProt:
A0A6M6BFZ1
LinkDB
All DBs
Position
complement(937027..941379)
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGVLGEEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALQLLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRVENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTEEESIQ
GEGRMFYSDEEVVIAINEGQLSKHAYIKVRTKVRDEEDNLVTKIIETVAGRVLFNQLVPE
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
KEKDALVLQAQNDVKAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNENDCGTLRGIETFALKDNEDI
VEPLAERILGRVAVHDIIDPLTDEVILTAGDEITEEITRRIDNTSIESVEIRSVLTCESK
RGICARCYGRNLSSGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASIR
AKFAGVVEFEDIRTVETANADGEPVKVVMGRSGEIRIVEKGTGKVFISNHVPYGSFLLVD
EGQEVEKGQELNNWDPYNAVILAEFDGTIQYDAITEGITYREESDEQTGHREKVIIESKA
KDQNPSIIVRPGKKGDMEGSKGYSIPVGSHLNVENGEKIKAGQILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGMPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTTFLEHQVIDKIVFMEENDTIIDMKVVTNAGDSTNLKPGQIVSARR
LRDENSSLRRRDLALVEVREAQPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRQVVGSKEDFEAAQAAKTDEAAAPTKRPA
RASRRESVSE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaaacaaaaaactggtacaggacttctcgaaagttaccatttcgctg
gcctcgcccgaatccattttggagcggtcgaacggtgaggttgtaaagcctgagacgatc
aactaccggacgtacaagcccgaaatgggtggcttgttctgcgagcggattttcggtccc
gtgaaggactgggaatgccactgcggtaaatacaagcgcatccggtacaaaggcatcatc
tgcgaccgttgcggcgtagaggtgaccgagaagaaagtacgtcgggagcggatgggccac
atcgaactggtggtgcccgttgcgcacatctggtacttcaagtccctacccaacaagatc
ggctatctgctaggcctgcctaccaagaagcttgatcagattatttattatgagcgctac
gtagtagtgcagccgggtgtactgggcgaagaaggcgtgcagcagctcgacttcctcacc
gaggacgaatacctcgacatcatcgacaagctcccccgcgagaaccagatgctgccgaac
gaggatccgaataaattcattgcccgtatgggtgctgatgctctgcagctgttgctggag
cgcatcaacctcgacgagctgtcgtactcattgcgtgactctgctgcgcacgagacttcg
cagcagcgtaaggctgaggctctgaagcgtctgcgcgtagtggaagctttccgtgatgcc
gcaacccgcgtggagaacaagcccgagtggatggtcatccgcatggtgccagttattccc
ccggaattgcgcccactggttccattggatggtggccgtttcgctacttccgacttgaac
gacctgtaccgtcgcgtgatcatccgtaacaaccgcctcaagcgcctgattgaaattaag
gctcctgaagtgattctgcggaacgagaagcgcatgctgcaggaagcagtagactcgctc
ttcgacaactcacgtaaggttaacgccgtgcgtgccgagggtaaccgcgcgctgaagtcg
ctgtctgacatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgt
gttgactactctggtcgttcggttattgtagtaggccccgagctgaaactgcacgagtgc
ggtctgcccaagaacatggcagctgagctgttcaagccgtttatcatccgtaagctcatc
gagcgcggtatcgtgaagacggtgaagtcggctaagaaaatcgttgaccgcaaggacgcc
gtagtatgggacatcctggagaatgtgctgaaaggccacccagtgctcctgaaccgtgct
cctacgctgcaccgcttgggtatccaggcgttccagccccgtctcatcgagggtaaggct
atccagctgcacccactagtgtgtacggctttcaacgctgactttgacggtgaccagatg
gctgtgcacgttcccctgggaccggccgctatcctggaagcctctatgctgatgctggcg
tcgcacaacatcctgaaccccgccaacggcgcgcccatcgcggtaccgtcgcaggacatg
gttctaggcctgtactacgtaaccaaaggcaagcgcagcactgaagaggagagcatccaa
ggcgaaggccgcatgttctactccgacgaggaagtggttattgctatcaacgaaggtcaa
ctttcgaagcacgcctatattaaggtgcgcacgaaggttcgtgacgaggaagataacctc
gtaacgaagatcatcgagacggtggctggccgcgtgctattcaaccagctcgtaccagaa
gaagtaggtttcgtggatgaactgctgacgaagaagaagcttcagcagatcatctcgatg
gtgttcaagcgtacgggcatggcccgcacggcgcagttcctcgacgacatcaagacgctg
ggcttccagtcggcttacaaaggtggtctatcaatgggtctgggcgacatccagattccg
aaagagaaggatgccctggttctgcaagcgcagaacgacgtgaaggccgttactcagaac
taccagatgggtctgattaccgacaatgagcgttacaaccaggttatcgacatctggacc
cgcatcaacaaccaaatcactgaaaccctcatgggtcgcctcgaaaaggagaaccagggc
ttcaactcgatttacatgatgatgcactccggtgctcgtggctcgcgtgagcagatccgt
cagctcggcggtatgcggggtctgatggctaagccacagaagtcgctgcagggctcggta
ggtgagattatcgaaaacccgattctgtctaacttcaaagaaggcctagacgtaatcgag
tacttcatctctacccacggtgcccgtaagggtctggccgacaccgctctgaagacggct
gacgccggctacctgacgcgtcgtctggtggacgtatcgcaggatgttatcgtaaacgaa
aacgactgcggcactctccgtggcatcgaaaccttcgctctgaaggataacgaggacatc
gtagagccgctggctgagcgtatcctgggtcgtgtagcagtacacgatatcatcgatccg
ctgaccgacgaggtgattctgacggctggtgacgaaatcacggaagaaatcacgcgtcgt
atcgacaacaccagcatcgaatcggtggaaatccgttcggtactgacttgtgagtcgaag
cgtggtatctgcgcccgttgctacggccgtaacctgtcgtcgggccgcatggtacagaaa
ggtgaggctgtaggcgtaattgctgctcagtcgatcggtgaacccggcacccagctgacc
ctgcgtaccttccacgtaggtggtactgcctcgaacattgccgttgaagctagcatccgt
gctaagttcgccggtgtggtggagttcgaagacatccggaccgttgaaactgctaacgcc
gatggcgagccagtgaaagtggtaatgggtcgttcgggcgaaattcgtatcgtggagaaa
ggcaccggtaaggtgttcatctcgaaccacgttccatacggctcattcctgctggttgac
gaaggtcaagaagtagagaaaggccaggagctgaataactgggacccctacaacgccgtt
attctggccgagtttgatggtaccattcagtatgacgccatcaccgaaggtatcacttac
cgcgaggagtcggacgaacagactggtcaccgcgagaaagtgattatcgaatcgaaagcc
aaggaccagaacccctcgatcatcgtgcgccccggcaagaagggcgacatggaaggctca
aagggctacagcatcccggtaggttcgcacttgaacgtagagaatggcgagaaaatcaag
gctggtcagattctggccaagattccgcgtgccgtgggcaaaacccgcgacattaccggt
ggtctgccccgcgttacggagcttttcgaagctcgtaacccctcgaacccggctgttgtg
tcggaaatcgacggtgtagtaacctacggtacggtgaagcgtggtaaccgtgaaatcttc
gtggagtcgaaagacggcgtcaagaagaagtacatggtgccgctttctaagcacattctg
gtgcaggacaacgacttcatccgggctggtatgccgctctccgatggtgctatcacgccg
tccgacatcctgagcattcagggtcccggtgcggtgcaggagtacctcgtgaacgagatt
caggaagtataccgtttgcagggtgtgaagatcaacgacaagcacatcgaggtggtagtt
cgccagatgatgcagaaagtcgtgatcctcgacgccggcgatacgaccttcctggagcat
caggttatcgacaagatcgtgttcatggaagaaaacgataccatcatcgacatgaaggtg
gtaacgaatgccggcgactcgaccaacttgaagcctggccagattgtgagtgcccgtcgc
ctgcgcgacgagaactccagcctgcgtcgtcgcgacttggctctggtagaagtacgcgaa
gcacagccggccgtatcgcggcccacgctgcagggtatcacccaggcttcgttgggtacg
cagtcgttcatctcggccgcttccttccaggagacgaccaaggtgctgtcggaagctgcc
atccgtggcaaggccgacgaactgctgggcctgaaggagaacgtaatcgtaggtcacctc
attccggccggtaccggtctgcgcgaatacacgcgtcaggtcgtgggctcgaaggaggat
ttcgaagccgctcaagctgcgaagaccgacgaagctgcggctcctaccaagcgccccgcc
cgggcctcacgccgcgagtccgtatcggagtag
DBGET
integrated database retrieval system
