Hymenobacter taeanensis: HMJ29_04895
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Entry
HMJ29_04895 CDS
T08050
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMJ29_04895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_04895 (mfd)
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMJ29_04895 (mfd)
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMJ29_04895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QJX49170
UniProt:
A0A6M6BMH3
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All DBs
Position
1146585..1150067
Genome browser
AA seq
1160 aa
AA seq
DB search
MTVGARLNPATRHSLKPTEKADAPVRLHLKGLVGSQDAVLAAALHQEFPDQHHLFVLHDR
DEAAYFLADLQHLVPDEEPLLFPSSYKRPYAFDETENANVLMRAEVLNKLNSHRGPKTSA
EQAADDAEDATAEAEGQPKGKKRVKATAKETAGALIVTYPEALFEKVINKKSLVANTFLV
KVGDKLDVNFISDMLAEYDFERTDFVYEAGQFAVRGGIVDIFSYANELPYRIELFGDEVE
TVRTFDPESQLSVEKRQQVSIIPNVQTKLLQETREAFLDFIPKNTAIWTKDMRQTLDVVE
ESFDRAEAGFKEMLESAGGVQIVSKPEDLFETSKSFKKLLEGFPIVEFGKRFYFKTGEDF
QFNSKPQPSFNKDFNRLVKNLHDNQQKGYTNIIAAEQVRQADRLRTIFDELDNNVQFQHL
LLGLREGFIDETLKLVVYTDHQLFERFYRAQETRKFSKKKALTLKELRTLVPGDYVVHQD
YGIARFAGLTQVEINDRLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGNPPTMSKLGS
PEWENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFAMDSFMQAELESSFIYEDTPDQAK
ATEDVKRDMEVPHPMDRLVCGDVGFGKTEVAIRAAFKAVADGKQVAILVPTTILAMQHYK
TFRERLSNLPVTVEYVNRFKSTKQIKETLGRVAEGKTDILIGTHRLTNKDVKFKDLGLLV
IDEEQKFGVKTKDKLKEIKVNVDTLTLSATPIPRTLHFSLMGARDLSVIATPPPNRQPVQ
TELHVFDELLVRDTIARELKRGGQVFYVHNRVKDIEEQANMILRLVPDARVTYVHGQMDG
DLLEKRMMKFVDGDYDVLVATTLIESGLDIPNANTIIINRAHMHGLSDLHQMRGRVGRSN
KKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFI
NDLGFETYHQILDEAVTELKETEFRDLFLGDTTQRLQEVAGAAGPKECNIETDLQVLIPD
RYVANVSERLQLYSKLDRAKNAEELRKVLNGMVDRFGPLPAEVEQLADIVRLRWQACHAG
FEKLTLKKNLLKGFIPATNNERYFQGPTFGNILSYVQTHPRSASMKERKEQLIISIEDVK
NVQAAQRILSELGSEEKVGV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgggtgcccgcctgaaccccgccacgcgccactctctgaagcccactgaaaaa
gcggacgctccggtgcgtctgcacctgaagggcttggtgggaagccaggatgccgtgctg
gccgcggccctgcaccaggagttcccggatcagcatcacctgtttgttctgcacgaccgg
gatgaggcagcctacttcctggccgatttgcagcacctggtgccggacgaggagccgctg
ctgttccctagctcctacaagcgcccctacgccttcgatgagacggaaaacgctaacgtg
ctgatgcgggcggaggtgctcaacaagctgaactctcaccgcggccccaaaaccagcgcc
gagcaagcggccgacgacgcggaggacgctacagcggaagcggaaggccagcccaagggt
aagaagcgcgtgaaggccacggccaaggaaaccgccggtgcgctcatcgtgacgtacccg
gaagcgctgtttgagaaggtaatcaacaagaaaagcctggtagccaacaccttcctggtg
aaggtgggcgacaagctcgatgtaaacttcatcagtgacatgctggcggagtacgacttc
gagcggaccgactttgtgtatgaggcggggcagtttgcagtgcgcggcggcattgtggac
atcttctcatatgccaacgagctgccctaccgcattgagctgttcggggatgaggtggaa
accgtccggacctttgaccccgagagccagctctcggtggagaagcgccagcaggtgagc
atcatcccgaacgtgcagaccaagctgctccaggaaacgcgcgaggcgtttctcgacttc
attccgaagaacaccgccatctggaccaaggacatgcgccagaccctggacgtggtggag
gaatcgtttgaccgggccgaggcgggctttaaggagatgctggaaagcgccggcggcgtg
cagattgtgagcaagcccgaagacctgtttgagaccagcaagagcttcaagaagctgctg
gagggcttcccgattgtggagtttggcaagcggttttatttcaagaccggcgaggacttc
cagttcaacagcaagccccagccgagcttcaacaaggacttcaaccgcctggtgaagaac
ctgcacgacaaccagcagaagggctacaccaatattattgccgccgagcaggtgcgccag
gccgaccgcctgcgcaccatcttcgatgagctggacaataacgtgcagtttcagcacctg
ctgctaggcctgcgcgaaggttttattgacgaaactctgaaactggtggtatacaccgac
caccagctgtttgagcgcttctaccgtgcccaggagacccggaagttctccaagaaaaag
gccctgaccctgaaggagctgcgcaccctggtgcccggcgactacgtggtgcaccaggac
tacggtattgcgcgctttgcgggcctcacccaggtagaaatcaacgaccggctacaggag
gccatccggctggtgtaccgcgacgacgatgtgctaacggtgagcatccatgccctgcat
aagattgccaagtactcgggggccgagggcaacccgcccaccatgagcaagctgggctca
ccggagtgggaaaacaagaagaagtcagtgaagaagaaggtgaaggacattgcggccgag
ctgattcggctgtacgccaagcgcaaaaccgcgcccggccacgcctttgccatggactcg
tttatgcaggctgagctggaatcgtcgttcatttacgaggacacgcccgaccaggccaag
gccaccgaggacgtgaagcgcgacatggaggtgccccaccccatggaccgcctcgtgtgc
ggcgacgtgggcttcggtaagaccgaggtagccattcgggcggcgtttaaggccgtggcc
gatggcaagcaggtggccattctggtgcctactaccattctggccatgcagcactacaaa
acgttccgggagcggctcagcaacctgcccgtgacggtagagtacgtgaaccgcttcaag
agcaccaagcagatcaaggaaacattgggccgcgtagcggagggcaaaaccgacatcctc
attggcacgcaccgccttactaacaaggacgtaaagttcaaggacctaggcctgttggtg
attgacgaggagcagaagttcggggtgaaaaccaaggacaagctcaaggagataaaggtg
aacgtagatacgctcaccctctcggctacgcctattccgcgcaccctgcacttctcgctg
atgggggcccgcgacctgagcgtaattgccacgcccccacccaaccgccagccggtgcaa
accgagctgcacgtgtttgatgagctgttggtgcgcgacaccattgcccgcgagctgaag
cggggcggacaggtattttatgtgcacaaccgggtgaaggacattgaggagcaggccaac
atgattctgcgcctggtacccgatgcccgcgtaacctacgtgcacggccagatggacggc
gacctgctggaaaagcgcatgatgaagtttgtggacggcgactacgacgtgctggtggcc
accaccctcattgagagtggcctagacatcccgaatgctaacaccatcatcattaaccgg
gcccacatgcacggcctcagtgacttgcaccagatgcgcgggcgcgtgggccgctccaat
aagaaggcctactgctacctgctcacgcccccggtggcgggcctgcccagtgatgcccgc
aagcgcctgagcaccctggaggaattctcggacctgggcgcgggcttcaacgtggccatg
cgcgacctcgacattcggggggcgggcaacctgctgggcggcgagcagtcgggctttatc
aatgacctgggcttcgagacctaccaccagattctggacgaggccgtgacagagctgaag
gaaaccgagttccgcgacctgttcctcggcgacaccacccagcgcctgcaggaagtggcc
ggcgccgcgggccccaaggagtgcaacattgagactgacttgcaggtgctgataccggac
cgctacgtggccaacgtatcggagcggttgcagctgtatagcaagctggatagggccaag
aacgccgaggagctgcgcaaggtgctcaacggcatggtggaccgcttcgggccgctgccc
gccgaggtggagcaactagccgacattgtgcgcctgcgctggcaggcctgccacgccggc
ttcgagaagctcacgctgaagaagaacctgctgaaaggcttcatcccggccaccaacaac
gagcggtacttccagggccccaccttcggcaatatcctcagctacgtgcaaacccacccc
cgctcggcctccatgaaggagcgcaaggagcagcttatcatcagcatcgaggacgtgaaa
aacgtgcaagccgcccaacgtattctgagcgagttgggaagtgaggagaaggttggggtg
tag
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integrated database retrieval system
