Hymenobacter taeanensis: HMJ29_08350
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Entry
HMJ29_08350 CDS
T08050
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hts
Hymenobacter taeanensis
Pathway
hts02020
Two-component system
hts02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HMJ29_08350 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HMJ29_08350 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hts03021
]
HMJ29_08350 (rpoN)
Transcription machinery [BR:
hts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HMJ29_08350 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
SF3b1
LacI
Thioredoxin_4
Motif
Other DBs
NCBI-ProteinID:
QJX49203
UniProt:
A0A6M6BNV5
LinkDB
All DBs
Position
complement(1955281..1956849)
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AA seq
522 aa
AA seq
DB search
MKQLLSQKLSPQQIQFIKLLQIPTAELEARIKEELEVNPALEEGDDNEEYEEEERSDDSD
DEDYDDPDSEFDNDDNTLDEDFRDEQGEEQPEIEIPVKDEEPTDTKESSSEEDLDLSDYL
NDDEIAGYKMQGDGPGEDEDDREMPLADTSGSLIDSLLDQLGFASLDEKQEAIGRQLIGS
IDGDGYIRRDLSAIANDLAFSQNIEATVPEVEAVLHVVQSFDPAGIGARDLQECLLLQLE
RRPQDDITEHAERILNETFDEFTKKHYQRIQQRLDLEDEEIKEAIALILKLNPKPGGTGP
VGMGKVQYIIPDFILTHDNGQFNLTLNSRNAPDLRVSPAYTEMFQAYDKASKKDKKMKEA
VTFVKQKLDSARWFIDAIRQRQNTLLRTMDSIVRYQRDFFQDGDESKLRPMILKDIATEI
GMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIEGEKKD
RPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttctctcgcagaagctgtcaccccaacagatacaatttattaagctgctg
cagattccgacggcagagctggaagcccgcatcaaagaagagctggaagtaaacccggcc
ctggaggaaggcgacgacaacgaggagtacgaggaggaggagcgctccgatgacagcgac
gacgaggactacgacgaccccgactcggagtttgataacgacgataacacgctcgacgag
gacttccgcgacgagcagggcgaagagcagcccgagatagaaatcccagttaaggatgag
gagcccaccgacacgaaggaatcgtcttcggaagaggacctcgacctgagcgactacctc
aacgacgacgaaatagccggctacaaaatgcagggcgacggccccggcgaggatgaggac
gaccgggaaatgcccctggccgataccagcggctcgctcatcgacagcctgctggaccag
ttgggcttcgccagcctcgatgaaaagcaggaagccatcggccgccagctcatcggctcc
atcgacggcgacggctacatccgccgcgacctgtcggccattgccaacgacctggctttc
tcgcagaacattgaggctacggtgcccgaggtagaggccgtgctgcacgtggtgcagtcg
tttgaccccgccggaattggtgcccgcgacctgcaggagtgcctgctgctgcaactagag
cgccgcccgcaggatgatattactgagcacgccgagcgcatcctaaacgagaccttcgac
gagtttaccaagaagcactaccagcgcattcagcagcgccttgacctggaagacgaggaa
attaaggaagctattgccctgattctgaagctcaaccccaagcccggcggcactggcccc
gtaggtatgggcaaagtgcagtacatcatccccgactttatcctaacccacgacaacggc
cagttcaacctgacgctcaactcccgcaacgctcctgatttgcgcgtgtcgccggcctac
accgagatgtttcaggcctatgacaaggcctcgaagaaggacaagaagatgaaggaggcc
gtgacctttgtaaagcagaagcttgactcggcccggtggtttattgatgccattcggcag
cgccagaataccctcctgcgcaccatggactccattgtgcgctaccagcgcgacttcttc
caggacggcgacgaaagcaagctgcgccccatgatcttaaaggatattgccaccgaaatt
gggatggacatttccacggtgagccgggtcgccaactcaaaatcggtgcagacggagttt
ggcatttaccccctgaagtacttcttctccgaaggcattgccactgactcgggtgaggac
gccagcagccgcgaggtgaagcatatcctgaaagaaatcatcgaaggcgaaaagaaagac
cgccccctctccgatgataagctggagaaaatgcttaacgcccgtggctacaatattgcc
cgccgcacggtggctaagtaccgcgagcagctgaatattccggtggcccgcctccggaaa
gagctctag
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