Hymenobacter taeanensis: HMJ29_13800
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Entry
HMJ29_13800 CDS
T08050
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMJ29_13800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hts03019
]
HMJ29_13800
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_13800
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMJ29_13800
Messenger RNA biogenesis [BR:
hts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMJ29_13800
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMJ29_13800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Ligase_CoA_2
Motif
Other DBs
NCBI-ProteinID:
QJX49256
UniProt:
A0A6M6BM79
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All DBs
Position
3250591..3252444
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AA seq
617 aa
AA seq
DB search
MQEDIIRSVLAGQDTLALLPTGGGKSICFQVPALARPGLCLVVSPLIALMKDQVENLRQR
NIKAEAVYAGMSHQEIDQTLDNCVYGPVKFLYVSPERLLTDMFRARVGKMKVSLLAIDEA
HCLSQWGYDFRPPYLRIQELRELLPGVPCIALTATATEQVRADIVEKLQFGASHRVFQQS
FARPNLSYSVLSTEDKLKRLLEVVRGVGANKTSIVYARTRRQTEEAANYLRQQGVAAAPY
HAGLPSEQRTRTQQDWMQNKTRCIVATNAFGMGIDKPDVRLVVHLDAPDNLEAYYQEAGR
AGRDEKYAFAVLLQGPNDADELRRRTQQAYPPLDTVRRVYQALANFSRTAVGGGELVAFD
FDLQQFAETYRIKALDAHNSLRTLEREGFVQVNEAVNNPARVHIPIDHTDLYRFQVANQQ
HDQLIKSLLRFNGGELFAGFQRISENSLAQHLRLSVVDVRKMLVFLHRSGIIQYQPKHEA
PQALFTTPRYDADKLPLDQKRLNQARELARHKTESVVQYAAGGRCRQQLLLEYFGELDAA
PCNVCDFCLAKKKARQEAAVASGLREQLVALVKANPQTPREVLTHFAPGQATSVTELLRE
LVDLGEVRYAADGRLNG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagacatcattaggtcggtgctggcggggcaggataccttggccctcctgccc
acgggcggcggcaagagtatctgcttccaggtaccggccctggccaggccaggtctgtgc
ctggtggtgtcgccgctgattgcgttgatgaaggaccaggtggaaaacctgcgccagcgt
aatatcaaggccgaagccgtgtacgctggcatgagccatcaggaaattgaccagaccctg
gataactgcgtgtatgggcccgtgaagttcctgtacgtgtcgccggagcggctactgacg
gacatgttccgggcgcgggtgggcaaaatgaaggtgagcctgctggccattgatgaagcg
cactgcctgtcacaatggggttacgacttccggccgccctacctgcgtattcaggaactg
cgggagctgctgcccggtgtgccctgcattgccctcactgccaccgccactgagcaggta
cgcgccgatattgtggagaagctgcagtttggtgcctcgcatcgggtgtttcagcagagc
ttcgcccggcccaacctgtcgtattctgtcctgagcaccgaagacaagctcaagcgcctg
ctggaagtggtgcggggagtgggggccaataagacaagcattgtgtacgcccgcacccgc
cgccaaactgaggaagccgccaattacctgcgccagcaaggggtggctgccgcgccctac
cacgccggcctgcccagtgagcagcgcacccgcacccagcaagactggatgcagaacaaa
acgcgctgcatagtggccaccaacgccttcggcatgggcatcgataagcccgatgtgcgc
ctggtggttcaccttgatgcccccgacaacctggaggcctactaccaggaagccggccgc
gccggccgcgacgagaagtatgcctttgcggtgctgctccaggggcccaacgatgccgat
gagctgcgccgccgtacccaacaggcctacccacccctggataccgtgcggcgcgtgtac
caggccctggcaaacttctcgcgcacggccgtgggtgggggcgagctggtcgcctttgac
ttcgacctgcaacaattcgcggaaacctaccgcatcaaggccttggatgcccacaacagt
ctgcgcaccttagagcgggaagggtttgtgcaggtaaacgaagccgtaaacaaccccgcc
cgcgtccatatccccatcgaccacaccgacctctaccgcttccaggtggccaatcagcag
cacgaccagctcattaagagcttgctgcgctttaatgggggcgagctgtttgcgggcttc
caacgaatttctgagaacagcctggcccagcatctgcgtctaagcgtggtagatgtgcgc
aagatgctggtgttcctgcaccgttccggcatcatccagtaccagcccaagcatgaggcg
ccgcaggccctgttcaccaccccgcgctatgacgccgacaagctcccgctggaccagaag
cgcctgaaccaggcccgcgagctggcccgccacaagactgagtcggtagttcagtatgcc
gccggggggcgctgccggcagcaactgttgttagagtattttggggagttggatgcagcg
ccttgcaatgtctgcgacttttgcctggccaagaagaaggcccggcaggaggccgcagta
gctagtggcctgcgcgagcaattggtggcgctggtaaaagctaacccacaaactccgcgc
gaagtcctgacgcatttcgcgccggggcaggccacctccgtaacggagctattgcgcgag
ctggtagacttgggagaggtacgctatgcggctgatgggcggctaaacgggtag
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