Hymenobacter taeanensis: HMJ29_17270
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Entry
HMJ29_17270 CDS
T08050
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hts
Hymenobacter taeanensis
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hts03032
]
HMJ29_17270
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_17270
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMJ29_17270
DNA replication proteins [BR:
hts03032
]
Prokaryotic type
DNA Topoisomerases
HMJ29_17270
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMJ29_17270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJX48573
UniProt:
A0A6M6BMA7
LinkDB
All DBs
Position
4126645..4127784
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AA seq
379 aa
AA seq
DB search
MTVSAARPKTRKKRLDPLEEAHLLYKDPARQAELAGLRYLTDSKPGLTRQAAPDGTFQYL
TPKGEPVTDEKVLNRIQGFVIPPAWTDVWISPSANTHLQVTGRDAKGRKQYLYHPAWDQA
RSLTKFSRLRAFGEKLAELRQHIHKDLSRPQLDKPKVIALVLTLMDQSFIRVGNKEYAKK
NKTYGLTTLRDKHVQVSGADVRFAFVGKKGVAHDLTIHDRKLARMVQKCKEIPGQHLFQY
YLPDGHRAELESGDVNEYLQQVTGLKLSAKDFRTWGGTVKMVECLEAIIDEEPEFPKPKT
LKRAIKDVAQNLGNTPTVCSKYYIHPQVVELFNSDKLIDYLRRHDADPSENDLLTPTEHM
VLEMLQELDGDKAALQASK
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtttctgccgcccgcccaaaaacccgcaaaaagcgcctcgacccattagaggag
gcccacttactgtacaaagacccagcccgccaggctgagctggctggcttacgctacctc
actgatagcaagcctggcctgacccgccaagccgcccccgacggaacgttccagtacctc
accccgaaaggggagccagttactgatgaaaaggtcctgaatagaattcaggggtttgtg
ataccgcccgcctggacggacgtatggatttcgccctccgccaacactcacttgcaggta
accggccgcgatgcaaagggccgtaagcagtacctgtaccatccggcctgggaccaggca
cggagtcttaccaagttcagtcgcctgcgggcatttggagagaagctagccgagctgcgc
cagcatattcacaaagacctaagccgaccccagctggataagcccaaggtaattgccctg
gtgcttaccctcatggaccagtcttttatacgggttggcaacaaggagtacgccaagaaa
aacaaaacctacggccttaccacgctgcgcgataagcacgtgcaggtaagtggcgccgat
gtgcgctttgcctttgtggggaaaaaaggcgtagctcacgacctaaccattcatgaccgg
aagctggcgcggatggtgcagaagtgcaaggagattccgggccagcacctctttcagtac
tacctgcccgatggccaccgcgccgagctggagtctggtgatgtaaatgagtatctgcag
caggtaactgggcttaagctttcggctaaggacttccggacctggggcggcaccgtaaaa
atggtagagtgcctggaggcaatcattgatgaagagccggagtttccgaagcccaaaacc
ttaaagcgagccattaaggatgtagctcaaaacctgggtaacacccccaccgtgtgctca
aaatactatatccatccgcaggtagtggagctctttaactccgacaagctcatcgactac
ctgcgccgccacgacgccgacccctccgagaatgacctgctgacccccactgaacacatg
gtgctggaaatgctgcaggagctggatggcgacaaagccgctttacaagcgagcaagtaa
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