Hymenobacter taeanensis: HMJ29_17290
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Entry
HMJ29_17290 CDS
T08050
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03030
DNA replication
hts03430
Mismatch repair
hts03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMJ29_17290
03430 Mismatch repair
HMJ29_17290
03440 Homologous recombination
HMJ29_17290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hts03032
]
HMJ29_17290
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_17290
Enzymes [BR:
hts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMJ29_17290
DNA replication proteins [BR:
hts03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMJ29_17290
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMJ29_17290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
RNase_H_2
DUF7508
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QJX48577
UniProt:
A0A6M6BKN5
LinkDB
All DBs
Position
complement(4131824..4133311)
Genome browser
AA seq
495 aa
AA seq
DB search
MYAIIDLETTGGQPTQDRITEIAIYIHDGEKVVDEYSTLLNPGRPIPFFITQLTGISDDM
VRDAPKFHEVARKVVEMTEGCVFVAHNVRFDYSFLKKEFADLGYNYSRKTLCTVRLSRSL
MPGQPSYSLGKLCQNIGIPLHDRHRASGDAAATAILFGRLLKISQQEEALVAPGLSPAET
LAAVDATAPSGRQPKTATKQPATRKIKAVQEAIRTALLPPNITPEKVASLPQEAGVYYFY
NQQGEVIYVGKSINIYKRIQQHFAVDYKSRKSLEFKNSISDITWELTGSELVALLFESHE
IKRMKPLYNRAQRRSVFPAGIFLRTDENGYKRLYYGRADDHAESHPLIALGNQFKAKGFL
FHKVSKFNLCQKLCDLYKTTGSCFDYQVHRCKGACIGLEPPEEYNQRVEEAIESFTYEHG
TFVIIGAGRHATEKSLVVVENGRYLGFGYVDETFSARRFVDFKDAITRYNDNKDVQQIIR
QYLRTKHKDKVKVFG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgccatcattgacttagaaactaccggcggtcagcccacgcaagaccgcatcacg
gaaattgccatctatattcacgacggtgagaaggtggtggatgagtacagcacgctgctc
aacccaggtaggcctatccccttctttatcacgcagctcacgggcatctccgacgacatg
gtgcgcgacgcgcctaagtttcatgaggtagcccgcaaagtggtggaaatgacggagggc
tgcgtgtttgtggcccacaacgtgcgctttgactatagctttctgaagaaggagtttgcc
gacttaggctataactactcgcgaaaaacgctgtgcacagtgcgattgagccgttctctg
atgccaggccaacccagctacagcctgggtaagctctgccagaatattggtattccgctc
cacgaccggcaccgggcctccggggatgccgccgcaacggccatactgttcgggcggctg
cttaagatctcgcaacaggaagaagccttggtggcccctggcctcagcccggccgaaaca
ctggcggccgtagatgctacggcaccgtcgggccgccaacctaaaactgcgaccaagcaa
cccgcgacccgcaaaatcaaagccgtacaggaagccattcgaacggccctgctcccgccc
aatattacccccgagaaggtagcttcattgcctcaggaggccggggtatactacttctat
aaccagcagggcgaagttatttacgtaggtaagagcattaatatttacaagcggattcag
cagcactttgccgttgattataagtcgcgcaagagtctggagtttaagaattccatttcc
gatatcacgtgggagctcacgggctctgaattggtagccctgctgtttgagtcgcatgag
ataaagcgcatgaagccgctgtataaccgggcgcagcgccgctccgtgtttccggcgggc
attttcttgcgcacagatgagaatgggtacaagcgactctactacggccgcgccgacgac
cacgccgagtcgcacccgctaattgcgttgggcaaccagtttaaggctaagggcttcctc
ttccataaagtatcaaaattcaacctgtgccagaagctctgcgacctgtataaaaccact
ggttcctgcttcgattatcaggtgcaccggtgcaaaggtgcctgcataggcctagagcca
cccgaagaatataatcagcgggtagaagaggccattgaatcattcacctatgagcacggc
acctttgtgattattggcgcgggccggcatgccacggagaaaagcctggtggtggtagaa
aacggcaggtacttgggctttggttatgttgatgaaacgttctcggcccgccgcttcgtg
gattttaaagacgccattacccgctacaacgacaacaaagatgtgcagcagatcattagg
cagtacctgcgcaccaagcacaaggataaagtaaaggtcttcggctaa
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