Hymenobacter taeanensis: HMJ29_18690
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Entry
HMJ29_18690 CDS
T08050
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMJ29_18690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hts03019
]
HMJ29_18690
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMJ29_18690
Messenger RNA biogenesis [BR:
hts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMJ29_18690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
Utp25_C
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QJX48826
UniProt:
A0A6M6BL31
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All DBs
Position
4450744..4452150
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AA seq
468 aa
AA seq
DB search
MSFDELNLIDPILRALHEEGYTNPTPIQEQAIPHVLDGRDLLGVAQTGTGKTAAFTVPIL
QVLHQTALVERHAPGRIRCLILTPTRELAIQIGESFASYGRHLKLRHTVIFGGVGQAPQV
NALKRGVDIIIATPGRLLDLMNQGFIDLRHLEVFVLDEADRMLDMGFIHDIKRLLPKLPA
SRQTLFFSATMPGQIQDLADTILKPNPVKVAVTPVSSTAEKVTQAVYMVEKENKAALLEH
VLSDKNIRRVLVFTRTKHGADKVVKTLAKANIPSEAIHGNKSQNHRQRALHNFKAGDTRV
LVATDIAARGIDVEELTHVINYEIPNEPETYVHRIGRTGRAGADGIALSFCEDEERAYLQ
DIQKLIRRQIPVVNQHPFASDNVAPVPLSGGPAIKRPKGPAGRPPRPGREGRPQGRSGER
PAGHGQRSGGGSSRPAGSSSGGRAATAGSSQGGGQRRRSRGGNGGANR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgacgaactaaaccttattgatcctatcctgcgtgccttgcacgaggaagga
tacaccaaccccactcccattcaggaacaagctattccgcacgtgttggatggccgcgac
ctcctcggggttgcccaaacgggcaccggcaaaactgccgctttcacagttcctatactt
caggttctgcatcaaacggccctggtagagcgccacgctcccggccgtatccgctgcctt
attctcacccccactcgcgagctggccattcaaattggagaaagctttgcctcttacggc
cgtcacttgaagctgcgccacactgttatttttggcggcgtaggccaggctccgcaggtg
aatgcgcttaagcgcggcgttgatatcatcattgccacacccgggcgcctgctcgacctc
atgaaccagggcttcatcgacctgcgtcacttagaggtatttgtgctcgacgaagccgac
cgcatgctcgacatgggcttcattcacgatatcaagcgtctgttgcctaagctgcccgct
tcccgccagaccctgtttttctcggccaccatgccggggcaaattcaggacctagccgat
actattctgaagccaaacccagtgaaagtggccgtgacacccgtgtccagcaccgctgag
aaggtaacgcaggccgtgtacatggtggagaaagagaataaggcggctctgctggagcac
gtattatcagataagaacatccgccgggtgctggtatttacgcgcaccaaacacggggcc
gataaagtggtgaaaacgcttgccaaggctaacattccatccgaggccatccacggcaac
aagtcgcagaaccaccgccagcgggctctgcacaacttcaaggccggtgacacacgcgta
cttgtggccactgacattgccgcccgcggtattgacgtggaggagctcacccacgttatt
aattacgaaatcccgaacgagcccgaaacctacgtgcaccgcattggccgcacgggtcgc
gccggcgccgatggcattgctctctccttctgcgaagacgaagagcgtgcctacctgcag
gatatccagaagctcattcgtcggcagattccggtggttaatcagcaccccttcgcgtct
gataatgtggcgcccgtaccactttctggtggcccagctattaaacgccctaaaggcccg
gctggccgccccccgcgccctggccgcgaaggtcgcccacaaggccgtagcggcgagcgg
cccgccggccacggtcagcgctctggtggaggctcctctcgcccagcaggctccagcagt
ggcggccgagctgccacggctgggagcagccagggcggtggccagcggcgccggtctcgc
ggtggcaacggcggcgccaaccgctaa
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