Hymenobacter taeanensis: HMJ29_18825
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Entry
HMJ29_18825 CDS
T08050
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMJ29_18825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hts03019
]
HMJ29_18825
03009 Ribosome biogenesis [BR:
hts03009
]
HMJ29_18825
Enzymes [BR:
hts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMJ29_18825
Messenger RNA biogenesis [BR:
hts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMJ29_18825
Ribosome biogenesis [BR:
hts03009
]
Prokaryotic type
rRNA helicases
HMJ29_18825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJX48851
UniProt:
A0A6M6BJV1
LinkDB
All DBs
Position
complement(4478638..4480578)
Genome browser
AA seq
646 aa
AA seq
DB search
MENETEKMKFSELTLSEEMQRAITEVGYEEASPIQAGAIPVLLAGRDVIGQAQTGTGKTA
AFSIPAIELINTDSREVQALVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQ
FRALERGVQIVIGTPGRVMDHIERGTLKLDNCKMIILDEADEMLDMGFRDDIETVLKKMP
EERQTVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTR
LIDMYNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEI
LVATDVAARGIDVDNVEVVVNYDLPADEEYYVHRIGRTGRAGKQGKAFTFVSGRDIYKLR
DIMRFTKATIKQERVPSFEDVSEVKTTLMLNSIKEVIDKGNLDKYIARVQRLIDQDQEDA
VTSLDVAAALLKMTMKEDKRAQESLDASRTQGAARAGFTRLFVTMGKKDRLHPRDIVDLI
AENTSLSAGKVGDIALYDKFSFVEIPNEFVEEVISQLGRSTIQGRPVAFNIATPRQEGDA
QQEGGNRGGFGGDRPRRGPGGFGGGERREGGYGGNRGGSYGDRREGGNSYGNRGGSYGGD
RREGGFGGNRGGGSYGGNRGGGSYGGNRGGGSYGGGYKGKRDGGDE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaacggaaaaaatgaagttcagtgagctgaccctctctgaagaaatgcaa
cgcgctattactgaggtaggctacgaggaagcctcgcctatccaggctggcgccattccc
gtgctgcttgctggccgcgatgtaattggccaggcccagacgggtaccggcaaaactgcc
gccttctctatcccagctattgaattaatcaataccgactcgcgtgaggtccaggccctg
gtgctttgcccaacccgtgagctggctgtacaggtttctggcgaaatccagaagctcggt
aaatacaagcgtggcttggccgttgtgccaatctacggtggctcttcttacgatcgtcag
ttccgggccctggagcgcggcgtgcaaattgtaattggtacccctggccgtgtaatggac
cacattgagcgtggtacgctgaagctcgacaactgcaaaatgatcatcctcgatgaggct
gacgaaatgctggacatgggcttccgcgacgacatcgagacggtgttgaaaaagatgcct
gaggagcgccagacggtgttcttctcggctaccatgagcaagccgatcatggagatgacc
aagcgctaccagaaggatccgcagattgtgaaggtaaaccatcaggaaatgacggttacc
aacatcgagcagagctactttgaggtacgtggcccgcagaagaaagatgttttgacgcgc
ctcatcgacatgtataacatcaagtcgggcatcgtcttcgctaacacgaagcgcatggtt
gacgagattgtgggcgacctgcaagccaaaggctacttcgccgaaggtctgcacggcgac
atgggccagcagcagcgccagaacacgctggataaattccgcaaaggcacgctggaaatc
ctcgttgctaccgacgttgctgcccgcggcatcgacgtggataatgtggaagtagtagta
aactacgacctgcccgccgacgaagaatactacgtgcaccgcattggccgtactggccgc
gctggtaagcagggcaaagccttcaccttcgtgagtggccgcgacatctataagctgcgc
gacatcatgcgcttcaccaaggccaccatcaagcaggagcgcgtgccgtccttcgaagat
gtgtcggaggtgaaaactaccctcatgctcaactctattaaggaggtgattgataagggt
aaccttgataagtacattgcacgcgtacagcgcctcattgatcaggaccaggaagatgcc
gtaacgtcgctggacgtagctgcggccctgctcaagatgaccatgaaggaggacaagcgc
gctcaggaaagcctcgacgccagccgcacccaaggtgctgcccgtgccggctttacgcgc
ctcttcgttaccatgggcaagaaggaccgtctgcatccccgcgacattgtagacctgatt
gccgagaacaccagcctttccgctggtaaagtaggcgacatcgccctgtacgacaaattc
agcttcgtggaaatcccgaacgagtttgttgaagaagtaatcagccagttgggccgcagc
accattcagggtcgtccggtagcctttaacattgctactcctcgccaggaaggtgatgcg
cagcaggaaggtggcaaccgcggtggcttcggtggcgaccgtcctcgtcggggcccaggg
ggcttcggtggtggtgagcgtcgcgagggcggctacggtggcaaccgtggtggctcctac
ggcgaccgtcgggaaggtggcaacagctacggtaatcgtggcggcagctacggcggcgac
cgtcgggaaggcggctttggtggcaaccgcggcgggggcagctacggtggtaaccgcggc
gggggcagctacggtggtaaccggggtggcggcagctacggcggtggctacaaaggcaag
cgcgacggcggcgacgaatag
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