Hymenobacter taeanensis: HMJ29_20200
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Entry
HMJ29_20200 CDS
T08050
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hts
Hymenobacter taeanensis
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hts03009
]
HMJ29_20200 (rlmD)
Enzymes [BR:
hts01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HMJ29_20200 (rlmD)
Ribosome biogenesis [BR:
hts03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HMJ29_20200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
MTS
Cons_hypoth95
PrmA
Motif
Other DBs
NCBI-ProteinID:
QJX49101
UniProt:
A0A6M6BKE4
LinkDB
All DBs
Position
4848829..4850238
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AA seq
469 aa
AA seq
DB search
MRKSVKNIPAELLREVEITDMVAEGKCLVRRENLVIFVTQVAPGDVVDLRVTKAKKNFLE
AVPTKFHKYSELRVTPFCEHFGTCGGCKWQHLAYETQLKFKHQQVADTLQRIGKVALPEI
LPIQASPDQTYYRNKLEYTFSHNGWLTNEQIASGHNYERRVLGFHTPARFDKILDINHCW
LQPDPSNQIRLAVRDYALEHDLPFNNLVTQEGFLRNLIIRTTNSGDLMVILQCYYAHDAL
LPLLDYIYERFPQITSLNYVLNDKGNETFHDLEVVCYKGEPYIHEEMEGLRFRVGPKSFY
QTNSEGAYNLYKITREFAQLTGSELVYDLYTGAGTIANFVARQAKHVVGVEYVESAVKDA
YINSEINGTTNTEFYAGDMKDVLNAEFIAKHGRPDVIITDPPRAGMHPDVIARLLEMRAP
RIVYVSCNPGTQARDLELLDEAYKVVKVQPVDMFPHTHHVENVVLLELR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgaggaaatcagtaaagaacatcccggcggagctgctccgcgaagttgaaatcaccgac
atggtggccgaaggcaaatgcctggtgcgccgcgagaacctggtcatttttgtgacacag
gtagcccccggcgacgtagtagacctgcgcgtaaccaaggccaagaagaactttctggaa
gccgtacccactaagtttcataagtattcggagctgcgcgtgacgccgttctgcgagcat
tttggtacttgcggaggttgtaagtggcagcatctagcctacgaaacccagcttaagttc
aagcaccagcaggtagccgacacgctgcagcgcattggcaaagtggccctgcccgaaatt
ctgcccattcaggcctcgcccgaccaaacgtattaccgcaacaagctagagtacacgttc
agccacaacggctggcttacgaatgagcagattgccagcggccacaattacgagcgtcgc
gtgctgggcttccacaccccggcccgtttcgataagatcctcgacatcaaccactgctgg
ttgcagcccgaccccagcaaccagatccgcctggcggtgcgcgactatgccctagagcat
gacctgccctttaacaacctggttacgcaggaaggcttcctacgcaacctcatcatccgt
acgaccaactctggtgacctgatggtgattttgcagtgctactacgcccacgacgcgttg
ctgccgttgctggattatatctacgagcggtttccgcaaatcacctcactcaactacgtg
ctcaacgacaagggcaatgaaaccttccacgacttggaggtggtgtgctacaagggcgag
ccgtacatacatgaggagatggaaggcttgcgcttccgcgtggggccaaagtcgttctac
cagacgaactctgaaggggcctacaacctatacaagattacgcgcgagtttgctcagctg
acgggctcagaactggtgtatgacctgtataccggcgctggcaccattgccaactttgtg
gcgcggcaggccaagcacgtagtaggcgtggagtatgtagagtcagcggtgaaggatgcc
tacatcaactccgaaatcaacggcacaacgaacaccgagttctacgccggcgacatgaaa
gacgtgctcaacgccgagttcattgccaagcacggccgccccgacgttatcattaccgac
ccacctcgcgccggcatgcaccccgacgtaatagctcgcctgctcgaaatgcgcgcgccc
cgcatcgtgtacgtcagctgcaaccccggcacccaagcccgcgacctggagctactggat
gaggcctacaaagtggtgaaagtgcagcccgtagatatgttcccgcatacccaccacgtg
gagaacgtggtgttgctggagctacgctaa
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