Vreelandella titanicae: HZS52_13970
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Entry
HZS52_13970 CDS
T06950
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
htt
Vreelandella titanicae
Brite
KEGG Orthology (KO) [BR:
htt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htt03019
]
HZS52_13970 (hrpA)
Enzymes [BR:
htt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HZS52_13970 (hrpA)
Messenger RNA biogenesis [BR:
htt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HZS52_13970 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
NACHT
T2SSE
PhoH
SLFN-g3_helicase
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNU60896
LinkDB
All DBs
Position
3043188..3047222
Genome browser
AA seq
1344 aa
AA seq
DB search
MEADSIVTTDTSPAPTDSQRLASLKQAAGDVMLRDAERLERRLAGLNRRLRDSKPISRGL
DEVQRELGRAQQQLSQRESQKVAFNYPPELPVVERREDIVNAIRDHQVVVVAGETGSGKT
TQLPKMCLELGRGRRGLIGHTQPRRLAARSVASRLAEELEVSLGEQVGYQVRFTDQSSPT
TLVKLMTDGILLAETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVII
TSATIDVERFAKHFGTTKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGILHAV
EEIEAVEREKGWLHGPRDVLVFLPGEREIRETADTLRRAELKGTEILPLYARLSNEEQNR
VFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQASAN
QRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFV
DPPDSRFVKDGFRLLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVL
IVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQLRR
WCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQARQTRRKTSGKVH
QALLSGLLSNLGTLVENREYLGARNRKFMIHPGSGLAKKSPKWIMAFEMVETSKLFARTV
AKIDPQWIEPQAQHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPIAPQE
SRELFIRRALVEGEFHTKGAFFAHNRALIDEVEALEDRARRRDILVDEDTLYDFYDQRIP
AEIVNGKGFEHWRKQAEQQEPQLLHFDIDSLKARDAEDVTQAQYPDHLILAGVAYPVSYH
FDPEAKDDGVTLTVPAAMLPQVPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDW
VDAALETLVPDQRPLTEALGEFIRRRTSTRVHPDDWRLDVLEPHLIMNIRVVDHAGETLG
QGRDLRALEQRFEAAASAGAQALAEQVSQEPAVAGLPKTPLPASRVTTQAGIRVEAYPAL
VAESRIAKTSGLDASEFKVALFDHPAKADAAHQEGIARLAIAKLPEQVKAIKQLPGVEKC
ALLFAKVGSKQALIDDLLLAVFTQVIAQHPLPRSEGEFSQRLNATQGQLVDEAKALLVRV
EAALKGHLAVSKVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGAWLDEYPRYTEAAL
IRLEKAARERGRDQMMMQDVQALEARFDARRESERRGRVEDPELVAFGWWLQELRVSLFA
QQLGTNMVVSVKRLEKRWQEITSV
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgactcaatcgtgaccaccgacacatccccagcccccaccgatagtcaacgt
cttgcgtcgctgaaacaggccgcgggcgatgtgatgctgcgcgatgcagagcggctggag
cgccggctggctggtttaaaccgtcgcctacgtgatagcaaaccgattagccgtggcttg
gacgaggtgcagcgcgagcttggtcgtgcccagcagcagctcagtcagcgcgaaagccaa
aaggtcgccttcaattacccgccagaattgccggtggtcgaacgccgggaggatattgtc
aacgccatccgcgatcatcaggtcgtggtggtggcgggggagaccggctcaggcaaaacc
acccagctgcctaaaatgtgtttggaactgggccgaggccgccgtggcttaattggccac
acccaaccgcgtcgcttggctgcccgcagtgtcgccagtcgcctggcggaagagctggaa
gtctctctgggcgagcaggtgggctatcaggtgcgcttcaccgaccagagcagcccgacg
accctggtcaaactgatgaccgacgggattttgctggccgagacccagcatgatccgctg
ctgctgcgttacgacaccatcattattgatgaagcccacgagcgcagcctgaatatcgac
tttctactcggctacctcaaacgtttgctccccaagcggcccgatctaaaagtcatcatt
acctcggcgactatcgacgtggagcgctttgccaaacacttcggcaccaccaagacgcct
gcaccggtggtggaagtcaccgggcgcacctaccccgttgaagtacactaccggccgctg
gtgcgcgatgaggacgatgaagaagaccgcacgctgcaagagggcattctgcacgcggtg
gaagagattgaagccgttgagcgtgaaaaaggctggttgcatggccctcgtgatgtgctg
gtgtttttacctggtgagcgcgaaattcgtgaaaccgccgataccctgcgccgcgccgag
ctgaaaggcactgaaatcctgccactctacgcgagactctccaacgaagagcagaaccgt
gtgtttgctccgcaccgtggcaggcgcattgtactcgccaccaacgtcgcggaaacgtcg
ctgaccgtgcctgggattcgctacgtgattgaccctggcctcgtacgtatcagccgctat
agctaccgttccaagatccagcgactgccggtagaagcggttagccaggccagcgccaac
cagcgtaaagggcgctgtgggcggattgccgaaggcgtgtgcattcgcctctacagcgaa
gaggatttcctatcccggcccggctttaccgacccggaaatccagcgcaccaaccttgcc
tcggtgattctctcgatgctggggctcaagctcggcgatatcgaggcctttccgtttgtt
gatccaccggatagccgctttgttaaagacggctttcgactgctgttcgagctgggggcg
gtggacgacaagcagcgcctttctccgcttgggcgtaagctggcgcggctgccgattgac
ccgcgcttggcgcgaatggtgttggcgggtgccgaattcggcagccttcgcgatgtgctg
atcgtcgtctcggcgctagccatccaagacccccgcgaccgaccggcggataagcgccag
gcggccgaccaagctcaccagcgctggcatgacccggattccgattttgtcgccttgctg
aacctttggcacggcattgagaatgcccgtgaggcgctttcaggtaatcaactgcgccgc
tggtgccgcgagcactacatcaactacctgcgcatgcgcgaatggcacgacaccttccgc
caactgcgccaactgctgcgcgatatggatatcgacgtgcccgcgccgccgccccgtaat
gaagacgagagcgaagaacaggcgcgtcaaacgcggcgtaaaacgtcgggcaaggtgcat
caggcgctactctctgggctgctctctaatctggggacgttggtggagaaccgcgagtat
ctcggcgcccgcaatcgcaagtttatgattcatccaggctcagggttggccaagaagtcg
cccaagtggatcatggcgttcgagatggtggaaacctccaagctgtttgcccgcaccgtg
gccaaaatcgatccccagtggattgaaccccaggcgcagcacctggttaaacgcagctac
agcgaaccgcattgggaaatgaagcgcgcccaggtagtggcctttgaacaggtcacgctg
tttggtctgccgattgtggcgcggcgcaaggtacattacgggccaatcgcgccccaggag
tcccgggagctgtttattcgccgtgcgctggtggaaggggaatttcacaccaaaggtgcc
ttctttgctcataaccgcgcgttgatcgacgaagtcgaagcgctggaagatcgcgctcgg
cggcgagatattctggtcgatgaagacacgctctatgacttttacgaccagcggatcccg
gcggagatagtcaacggcaagggctttgagcactggcgtaagcaggccgagcagcaagag
ccacaattactgcatttcgatattgattcacttaaagcgcgcgacgcggaggacgttacc
caggcgcagtatcctgatcatttgattctggcgggcgtcgcgtatccggtaagctaccac
tttgaccccgaagccaaggatgacggtgttaccctgaccgttcccgctgcaatgttgccc
caggtgccggtgcatgctctggagtggttggtacctgggctgctgcgtgaaaagtgtatt
gcgcttctgaagtcactgccgaaaagcatccgccgccaggtggtgccgattcctgattgg
gtggatgcggcgctggaaaccctggtgcccgatcagcgcccgttaaccgaggccttgggg
gagttcattcgccgccgtacatcgacgcgggtgcatcccgacgactggcgcctcgacgtg
ctcgaaccgcatctgatcatgaatattcgcgtggtcgatcacgcgggcgaaaccttaggg
caggggcgcgatctgcgtgctttagagcagcgctttgaagcggcagccagcgcaggcgcc
caggcactggctgaacaggttagccaagagcccgctgtggccgggctacccaagacgccg
ctgcccgcttcgcgcgttaccacccaggcaggtattcgcgtagaggcgtatcctgccctg
gtcgctgaaagcaggattgcgaaaaccagcggtcttgacgccagcgagttcaaggtggcg
ttgtttgatcaccctgcaaaagctgacgctgcccaccaggagggcatcgctcggctggca
attgccaagctacctgaacaggttaaagcgattaaacaactgccgggtgttgagaagtgc
gcgctactgttcgccaaagtgggtagtaaacaagctttgatcgacgatctgctgcttgcg
gtgtttacccaggtgattgctcagcaccccctgccgcgctcggaaggcgagtttagccag
cgactaaacgctactcagggtcagcttgtagacgaagcgaaagcactgctggtacgcgta
gaggccgcgctaaaagggcatctggcggtcagtaaggtgctcaaagggaagcttaatttt
gctctggcgctggtgtatagcgatgttagcgcgcagatgcaacgtctggtctatccaggc
tttattcgcgatgcgggcgcttggctggacgaatacccgcgctacaccgaggcggcgctc
attcggcttgaaaaagccgcccgtgagcgcggtcgcgatcaaatgatgatgcaagatgtc
caggcattagaggcccgctttgatgcccgccgcgaaagcgagcgacgcggaagggtggaa
gatcctgaattggtcgcttttggctggtggctgcaggagcttagagtatcgctatttgca
cagcagttggggactaacatggtggtgtcggtaaaacgattggaaaaacgctggcaagag
atcactagcgtttag
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integrated database retrieval system
